Hg_chrom9_TN10mRNA_18138
Organism: Heterodera glycines Gene Locus: chr9:8410168-8412600 Feature type: polypeptideProtein Sequence
Length: 560
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.914 | 1.495 | 1.591 | 0.985 | 1.012 | 0.916 | 0.468 | 0.893 | 1.548 | 0.989 | 0.839 | 1.681 | 1.538 | 1.065 | 0.911 | 1.122 | 0.761 | 0.731 | 0.549 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17148
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.532
|
0.304
|
0.014
|
0.615
|
0.164
|
0.293
|
0.155
|
0.019
|
0.170
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000170
|
10.000
|
2.000
|
Hsc_gene_13868.t1;Hsc_gene_13881.t1
|
— | — |
Q9MAQ3.2 Putative ubiquitin carboxyl-terminal hydrolase 11 [Arabidopsis thaliana]
|
KAI3410125.1 CSN-associated deubiquitinating enzyme Ubp12 [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.900|GO:0005575_0.783|GO:0110165_0.783|GO:0003674_0.758|GO:0005622_0.700|GO:0009987_0.648|GO:0008152_0.640|GO:0003824_0.630|GO:0065007_0.622|GO:0044238_0.620|GO:0043170_0.608|GO:0050789_0.608|GO:0016787_0.589|GO:0140096_0.586|GO:0005737_0.578|GO:0043226_0.576|GO:0016020_0.575|GO:0019538_0.567|GO:0008233_0.564|GO:0043229_0.548|GO:0019783_0.543|GO:0101005_0.543|GO:0050794_0.521
|
IPR001394+29-551+|IPR028889+28-554+|IPR038765+26-553+|IPR050185+18-555+
|
— |
PF00443+29-551+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR21646+18-555+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24
|
1.000
|
25-560
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
62890.960
|
4.577
|
-22.000
|
26.607
|
10.536
|
49.107
|
50.893
|
11.786
|
14.821
|
52.679
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
654.921
|
8.759
|
9.808
|
34.269
|
139.161
|
2244.119
|
56.099
|
2062.368
|
62.602
|
1110.358
|
661.320
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.830
|
1.920
|
1.992
|
4.026
|
-5.311
|
— |
-5.051
|
— | — | — | — | — |
No JSON data available for plots.