Hg_chrom9_TN10mRNA_18139
Organism: Heterodera glycines Gene Locus: chr9:8413417-8417042 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.199 | 0.837 | 1.003 | 0.248 | 1.199 | 0.492 | 1.256 | 1.199 | 1.172 | 1.134 | 1.49 | 1.693 | 1.199 | 0.646 | 0.538 | 0.788 | 0.865 | 1.272 | 0.553 | 0.353 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17149
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.400
|
0.483
|
0.100
|
0.745
|
0.129
|
0.204
|
0.135
|
0.118
|
0.161
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013166
|
1.000
|
1.000
|
Hsc_gene_13882.t1
|
Hsc_gene_13882.t1
|
— |
P91427.1 Probable phosphoglycerate kinase [Caenorhabditis elegans]
|
KHN75980.1 putative phosphoglycerate kinase [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004618|GO:0006096
|
GO:0005575_0.776|GO:0110165_0.776|GO:0003674_0.720|GO:0008150_0.666|GO:0005622_0.624|GO:0005737_0.541|GO:0009987_0.535|GO:0003824_0.509
|
IPR001576+3-417_5-415_8-415_9-405_9-415_13-29_34-56_113-128_156-178_185-207_208-227_332-357_368-379_391-408+|IPR015824+1-72_75-416_202-391+|IPR015911+18-28+|IPR036043+4-415+
|
— |
PF00162+9-405+Phosphoglycerate_kinase
|
G3DSA:3.40.50.1260:FF:000005+1-76+Phosphoglycerate_kinase|G3DSA:3.40.50.1260:FF:000031+199-403+Phosphoglycerate_kinase_1|G3DSA:3.40.50.1260:FF:000032+77-198+Phosphoglycerate_kinase
|
PTHR11406+5-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-417
|
4o3f_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
44600.300
|
7.251
|
4.000
|
27.578
|
8.633
|
43.885
|
56.115
|
14.868
|
12.710
|
53.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
3197.722
|
1996.480
|
2389.040
|
3691.673
|
6275.961
|
4933.629
|
5106.972
|
2219.307
|
681.934
|
3498.688
|
2291.507
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.750
|
0.736
|
0.734
|
-0.333
|
— |
-1.258
|
1.346
|
-2.482
|
— | — | — | — |
No JSON data available for plots.