Hg_chrom9_TN10mRNA_18140
Organism: Heterodera glycines Gene Locus: chr9:8417341-8418027 Feature type: polypeptideProtein Sequence
Length: 101
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 0.461 | 0.9 | 0.683 | 0.99 | 1.269 | 0.589 | 1.485 | 0.88 | 0.803 | 1.05 | 1.747 | 1.925 | 0.762 | 1.819 | 0.424 | 0.812 | 1.65 | 0.0 | 2.038 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17150
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.267
|
0.834
|
0.066
|
0.325
|
0.049
|
0.048
|
0.037
|
0.197
|
0.065
|
0.287
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013167
|
1.000
|
1.000
|
Hsc_gene_13883.t1
|
Hsc_gene_13883.t1
|
— | — |
KAH7675981.1 GNAT domain containing protein [Aphelenchus avenae]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR016181+12-86+|IPR031165+7-97_15-86+|IPR045057+13-86+
|
— |
PF14542+15-86+GCN5-related_N-acetyl-transferase
|
— |
PTHR31435+13-86+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-101
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
11883.760
|
9.611
|
6.500
|
29.703
|
16.832
|
44.554
|
55.446
|
18.812
|
10.891
|
43.564
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
309.428
|
217.375
|
429.108
|
294.589
|
337.253
|
236.706
|
502.543
|
296.615
|
131.002
|
387.677
|
277.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
0.301
|
-0.433
|
0.163
|
-0.496
|
1.096
|
— |
0.903
|
— | — | — | — | — |
No JSON data available for plots.