Hg_chrom9_TN10mRNA_18142
Organism: Heterodera glycines Gene Locus: chr9:8420448-8422717 Feature type: polypeptideProtein Sequence
Length: 224
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.727 | 1.136 | 0.154 | 1.637 | 0.572 | 0.691 | 0.446 | 1.29 | 1.569 | 0.879 | 1.838 | 1.736 | 0.429 | 1.731 | 0.574 | 0.732 | 1.42 | 1.03 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17152
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRIRAQMPMEEKARKA,RRDKLAELVFTNVEKRERL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.256
|
0.506
|
0.095
|
0.159
|
0.857
|
0.190
|
0.337
|
0.196
|
0.122
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013169
|
1.000
|
1.000
|
Hsc_gene_13885.t1
|
Hsc_gene_13885.t1
|
— |
O34932.1 Dephospho-CoA kinase [Bacillus subtilis subsp. subtilis str. 168]
|
KAI1728651.1 dephospho-CoA kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004140|GO:0005524|GO:0015937
|
GO:0005575_0.852|GO:0110165_0.848|GO:0005622_0.754|GO:0005737_0.739|GO:0016020_0.717|GO:0043226_0.635|GO:0043229_0.614|GO:0043227_0.584|GO:0043231_0.577|GO:0008150_0.567|GO:0009987_0.516|GO:0003674_0.513
|
IPR001977+1-200_3-184_3-191_3-208+|IPR027417+1-195_1-202+
|
— |
PF01121+3-184+Dephospho-CoA_kinase
|
G3DSA:3.40.50.300:FF:000991+1-200+Dephospho-CoA_kinase
|
PTHR10695+2-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
25764.860
|
5.242
|
-3.000
|
31.250
|
10.268
|
45.089
|
54.911
|
15.179
|
16.071
|
42.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
663.224
|
622.625
|
515.889
|
641.311
|
711.090
|
631.573
|
728.799
|
574.947
|
636.386
|
764.479
|
709.582
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.501
|
— |
0.423
|
— | — |
0.218
|
-0.241
|
0.486
|
— | — | — | — | — |
No JSON data available for plots.