Hg_chrom9_TN10mRNA_18147
Organism: Heterodera glycines Gene Locus: chr9:8448291-8450814 Feature type: polypeptideProtein Sequence
Length: 541
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 1.419 | 1.58 | 1.084 | 0.986 | 0.901 | 0.462 | 1.109 | 1.52 | 1.024 | 0.812 | 1.74 | 1.54 | 0.995 | 0.981 | 1.162 | 0.697 | 0.84 | 0.569 | 0.707 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17157
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.624
|
0.274
|
0.009
|
0.648
|
0.120
|
0.257
|
0.139
|
0.008
|
0.143
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000170
|
10.000
|
2.000
|
Hsc_gene_13868.t1;Hsc_gene_13881.t1
|
— | — |
A5PMR2.1 Ubiquitin carboxyl-terminal hydrolase 33 [Danio rerio]
|
KAI3410125.1 CSN-associated deubiquitinating enzyme Ubp12 [Globodera pallida]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.899|GO:0005575_0.776|GO:0110165_0.776|GO:0003674_0.759|GO:0005622_0.692|GO:0008152_0.645|GO:0009987_0.640|GO:0003824_0.638|GO:0044238_0.622|GO:0043170_0.610|GO:0065007_0.594|GO:0016787_0.589|GO:0140096_0.586|GO:0050789_0.581|GO:0016020_0.569|GO:0008233_0.563|GO:0043226_0.563|GO:0005737_0.551|GO:0019538_0.545|GO:0043229_0.542|GO:0019783_0.541|GO:0101005_0.518|GO:0050794_0.515
|
IPR001394+16-532+|IPR028889+15-535+|IPR038765+14-534+|IPR050185+11-536+
|
— |
PF00443+16-532+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR21646+11-536+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-541
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
60962.980
|
4.730
|
-18.000
|
26.987
|
10.906
|
48.983
|
51.017
|
12.384
|
14.603
|
52.126
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
367.145
|
20.574
|
27.355
|
57.899
|
186.603
|
1232.743
|
82.771
|
1101.827
|
0.000
|
590.095
|
337.197
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.355
|
1.188
|
1.658
|
2.738
|
-3.886
|
— |
-3.587
|
-10.005
|
6.712
|
— | — | — |
No JSON data available for plots.