Hg_chrom9_TN10mRNA_18150
Organism: Heterodera glycines Gene Locus: chr9:8456407-8458630 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.562 | 0.899 | 2.459 | 0.0 | 2.415 | 0.495 | 1.495 | 0.242 | 0.644 | 0.914 | 1.83 | 1.421 | 0.939 | 0.836 | 0.69 | 0.345 | 0.317 | 0.732 | 1.858 | 0.426 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17160
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.931
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.656
|
0.272
|
0.015
|
0.619
|
0.136
|
0.201
|
0.139
|
0.001
|
0.114
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013175
|
1.000
|
1.000
|
Hsc_gene_13896.t1
|
Hsc_gene_13896.t1
|
— |
Q23280.1 Co-chaperone protein daf-41 [Caenorhabditis elegans]
|
KAI1728315.1 co-chaperone protein daf-41 [Ditylenchus destructor]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0051879
|
GO:0005575_0.872|GO:0110165_0.825|GO:0008150_0.795|GO:0005622_0.785|GO:0009987_0.730|GO:0003674_0.645|GO:0005737_0.636|GO:0008152_0.626|GO:0043226_0.619|GO:0043229_0.615|GO:0005488_0.602|GO:0044237_0.600|GO:0009058_0.586|GO:0044238_0.568|GO:0044249_0.565|GO:0005515_0.538|GO:0043170_0.530|GO:0009059_0.516|GO:0016020_0.514|GO:0065007_0.507
|
IPR007052+6-92+|IPR008978+6-122_7-112+|IPR045250+8-181+
|
— | — |
G3DSA:2.60.40.790:FF:000013+6-123+Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase
|
PTHR22932+8-181+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
103-207
|
1.000
|
1-102
|
2kmw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.955
|
23243.430
|
4.133
|
-25.500
|
43.961
|
7.729
|
54.106
|
45.894
|
15.942
|
28.019
|
48.309
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
5757.805
|
3526.303
|
2981.903
|
9541.326
|
10648.819
|
6770.917
|
6321.368
|
3467.051
|
3163.023
|
6596.497
|
5125.008
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.473
|
1.299
|
1.788
|
0.126
|
-0.638
|
— |
-1.070
|
1.009
|
— |
1.751
|
— | — | — |
No JSON data available for plots.