Hg_chrom9_TN10mRNA_18155
Organism: Heterodera glycines Gene Locus: chr9:8466935-8469038 Feature type: polypeptideProtein Sequence
Length: 346
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.773 | 1.008 | 0.841 | 0.997 | 0.867 | 0.889 | 0.86 | 2.168 | 1.092 | 1.094 | 1.226 | 1.36 | 1.044 | 0.723 | 1.121 | 0.867 | 1.09 | 1.27 | 1.112 | 0.68 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17164
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-24
|
0.793
|
0.987
|
0.000
|
0.000
|
0.179
|
0.322
|
0.119
|
0.282
|
0.075
|
0.060
|
0.092
|
0.029
|
0.331
|
0.904
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013177
|
1.000
|
1.000
|
Hsc_gene_13897.t1
|
Hsc_gene_13897.t1
|
— |
P26262.2 Plasma kallikrein [Mus musculus]
|
XP_065331420.1 proclotting enzyme-like [Cloeon dipterum]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.803|GO:0005575_0.731|GO:0110165_0.723|GO:0003674_0.583
|
IPR001254+77-335_78-340_88-135_88-338_173-335+|IPR001314+113-128_206-220_290-302+|IPR009003+66-339+|IPR018114+123-128+|IPR043504+72-339+|IPR051487+78-341+
|
SM00020+77-335+
|
PF00089+88-135_173-335+Trypsin
|
— |
PTHR24256+78-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-346
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
38721.590
|
9.496
|
20.500
|
27.746
|
11.850
|
48.266
|
51.734
|
17.919
|
9.827
|
50.578
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
80.834
|
8.291
|
15.978
|
22.560
|
80.412
|
182.216
|
35.017
|
16.479
|
75.799
|
161.444
|
124.739
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.309
|
0.606
|
1.800
|
1.197
|
-2.368
|
-3.585
|
1.239
|
— | — | — | — | — |