Hg_chrom9_TN10mRNA_18157
Organism: Heterodera glycines Gene Locus: chr9:8483358-8485549 Feature type: polypeptideProtein Sequence
Length: 258
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.856 | 0.811 | 0.634 | 0.535 | 0.388 | 0.696 | 1.154 | 0.969 | 2.756 | 1.833 | 0.822 | 0.456 | 1.184 | 0.894 | 0.949 | 0.609 | 0.508 | 0.881 | 1.491 | 1.938 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17166
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KKKQQRNAGIGISLGRRKD,KKQQRNAGIGISLGRRKDI
|
8-28
|
0.785
|
— | — | — | — |
0.000
|
— | — |
0.157
|
0.068
|
0.012
|
0.162
|
0.207
|
0.629
|
0.455
|
0.005
|
0.672
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013179
|
1.000
|
1.000
|
Hsc_gene_13907.t1
|
Hsc_gene_13907.t1
|
— | — |
KAH7730175.1 Protein C49A1.10 [Aphelenchus avenae]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR051115+33-200+
|
— | — | — |
PTHR12479+33-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-258
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
28883.250
|
9.733
|
13.500
|
17.829
|
14.729
|
31.395
|
68.605
|
12.016
|
5.814
|
43.411
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
1333.251
|
1380.023
|
3022.511
|
931.778
|
459.350
|
1427.019
|
791.841
|
5394.737
|
124.192
|
712.107
|
460.143
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.903
|
-0.704
|
-1.589
|
-1.053
|
1.649
|
-0.838
|
1.815
|
-2.624
|
— | — | — | — | — |
No JSON data available for plots.