Hg_chrom9_TN10mRNA_18158
Organism: Heterodera glycines Gene Locus: chr9:8489015-8490851 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 0.616 | 1.139 | 0.582 | 1.084 | 1.174 | 0.832 | 1.084 | 1.071 | 1.27 | 1.935 | 0.709 | 1.004 | 0.973 | 1.377 | 1.17 | 0.474 | 0.511 | 0.741 | 0.78 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17167
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKYLKDDRTIRRQRA,KKRKSNSEERKKPSKKK.,KKKKGGSSHKKSGSSHKKSASSHKKKKSNSAEDKKKSQAPQKKRKSNSEEEKKKKSQAPQKKRKSNSEERKKPSKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.576
|
0.082
|
0.006
|
0.676
|
0.043
|
0.063
|
0.100
|
0.003
|
0.193
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000618
|
4.000
|
3.000
|
Hsc_gene_13877.t1;Hsc_gene_13909.t1;Hsc_gene_870.t1
|
Hsc_gene_13877.t1;Hsc_gene_870.t1
|
— |
Q54DF7.1 Probable serine/threonine-protein kinase DDB_G0292354 [Dictyostelium discoideum]
|
KAI3422031.1 hypothetical protein GPALN_012568 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.945|GO:0110165_0.945|GO:0005622_0.918|GO:0043226_0.825|GO:0043229_0.822|GO:0008150_0.761|GO:0016020_0.758|GO:0005737_0.729|GO:0009987_0.710|GO:0043227_0.695|GO:0003674_0.676|GO:0043231_0.629|GO:0065007_0.556|GO:0050789_0.539|GO:0003824_0.529|GO:0140096_0.529|GO:0050794_0.523|GO:0008152_0.518|GO:0043170_0.518|GO:0043228_0.518|GO:0043232_0.518|GO:0016740_0.517|GO:0005634_0.512
|
IPR000719+18-318_19-299+|IPR011009+14-314+|IPR050235+15-383+
|
SM00220+18-318+
|
PF00069+19-299+Protein_kinase_domain
|
— |
PTHR11909+15-383+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
312-415
|
1.000
|
1-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
46847.760
|
10.316
|
32.500
|
34.458
|
9.398
|
52.771
|
47.229
|
21.687
|
12.771
|
44.578
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
633.975
|
17.801
|
25.743
|
32.122
|
84.425
|
1994.310
|
78.388
|
3204.910
|
0.000
|
734.504
|
419.716
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.714
|
— |
1.365
|
4.575
|
-4.659
|
— |
-5.207
|
-10.315
|
5.862
|
— | — | — |
No JSON data available for plots.