Hg_chrom9_TN10mRNA_18160
Organism: Heterodera glycines Gene Locus: chr9:8495251-8502866 Feature type: polypeptideProtein Sequence
Length: 868
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 0.965 | 1.341 | 0.556 | 1.325 | 0.739 | 0.535 | 1.613 | 1.434 | 1.432 | 0.751 | 2.236 | 1.44 | 0.731 | 1.176 | 0.823 | 0.793 | 0.855 | 1.329 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17169
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKR,RRDFLDKLEQRQRSGKRRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.751
|
0.085
|
0.007
|
0.512
|
0.122
|
0.113
|
0.083
|
0.006
|
0.065
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013181
|
1.000
|
1.000
|
Hsc_gene_13915.t1
|
Hsc_gene_13915.t1
|
— |
Q6DIE2.1 Nuclear cap-binding protein subunit 1 [Xenopus tropicalis]
|
KAH7730165.1 Nuclear cap-binding protein subunit 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000339|GO:0003723|GO:0005515|GO:0005846|GO:0006406|GO:0016070
|
GO:0008150_0.848|GO:0005575_0.726|GO:0008152_0.688|GO:0044238_0.672|GO:0009987_0.643|GO:0043170_0.642|GO:0110165_0.634|GO:0006139_0.604|GO:0090304_0.587|GO:0016070_0.580|GO:0065007_0.564|GO:0005622_0.563|GO:0016020_0.561|GO:0050789_0.556|GO:0050794_0.527|GO:0044237_0.510
|
IPR003890+25-233_28-232+|IPR015172+336-464+|IPR015174+481-832+|IPR016024+32-280_296-473_472-864+|IPR027159+13-866+
|
SM00543+25-233+
|
PF02854+28-232+MIF4G_domain|PF09088+336-464+MIF4G_like|PF09090+481-832+MIF4G_like
|
— |
PTHR12412+13-866+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
656-760
|
2.000
|
1-655;761-868
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
100025.430
|
4.986
|
-26.000
|
29.263
|
13.134
|
46.889
|
53.111
|
13.940
|
15.323
|
44.470
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1838.501
|
1631.862
|
1542.576
|
2150.503
|
2749.389
|
1965.162
|
2569.292
|
1085.658
|
1623.185
|
1690.639
|
1661.730
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.311
|
0.261
|
0.588
|
0.323
|
-0.470
|
0.397
|
-0.959
|
1.385
|
— | — | — | — | — |
No JSON data available for plots.