Hg_chrom9_TN10mRNA_18161
Organism: Heterodera glycines Gene Locus: chr9:8503141-8508646 Feature type: polypeptideProtein Sequence
Length: 536
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 1.562 | 0.848 | 0.643 | 1.026 | 1.1 | 0.911 | 1.493 | 1.078 | 1.286 | 0.763 | 2.744 | 0.829 | 1.112 | 1.028 | 1.199 | 0.642 | 0.848 | 0.718 | 0.933 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17170
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.399
|
0.279
|
0.015
|
0.563
|
0.129
|
0.321
|
0.248
|
0.010
|
0.112
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013182
|
1.000
|
1.000
|
Hsc_gene_13916.t1
|
Hsc_gene_13916.t1
|
— |
O49068.1 Tubulin gamma-2 chain [Oryza sativa Japonica Group]
|
KAI1708082.1 tubulin/FtsZ family, GTPase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005525|GO:0005874|GO:0007017
|
GO:0005575_0.868|GO:0110165_0.863|GO:0005622_0.796|GO:0043226_0.741|GO:0008150_0.737|GO:0043229_0.731|GO:0009987_0.673|GO:0005737_0.603|GO:0003674_0.574|GO:0016020_0.548|GO:0043228_0.503|GO:0043232_0.503
|
IPR000217+4-486_11-31_52-71_99-110_111-135_137-155_156-177_180-193_194-214+|IPR003008+4-215_48-264+|IPR004057+84-102_127-146_153-175_176-193_194-209+|IPR008280+402-475+|IPR036525+1-286_4-262+|IPR037103+387-445+
|
SM00864+48-264+
|
PF00091+4-215+Tubulin/FtsZ_family,_GTPase_domain
|
— |
PTHR11588+4-486+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
519-536
|
1.000
|
1-518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
59736.060
|
6.920
|
4.000
|
23.881
|
10.075
|
47.201
|
52.799
|
13.060
|
10.821
|
50.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
1462.665
|
1404.942
|
782.256
|
1340.457
|
2017.680
|
1399.368
|
3169.598
|
657.680
|
643.249
|
1877.231
|
1348.381
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.075
|
-0.205
|
0.887
|
0.558
|
-0.514
|
1.190
|
-1.196
|
2.412
|
-1.652
|
— | — | — | — |
No JSON data available for plots.