SCN Proteipedia

Hg_chrom9_TN10mRNA_18162

Organism: Heterodera glycines Gene Locus: chr9:8522531-8531166 Feature type: polypeptide

Protein Sequence

Length: 1,074

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.974	1.018	1.168	0.674	0.605	1.098	0.998	2.654	0.766	0.931	0.395	0.602	0.776	1.164	1.615	1.397	1.13	0.861	1.289	0.739	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17171	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Not_Clustered	0.566

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	golgi_apparatus	—	KRDFRPVIHRRRRHRRE,KKRVKRDFRPVIHRRRRHRR	6-46	0.761	—	—	—	—	0.000	—	—	0.132	0.079	0.024	0.150	0.430	0.415	0.508	0.063	0.438	0.249

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013183	1.000	1.000	Hsc_gene_13918.t1	Hsc_gene_13918.t1	—	O17798.3 Furin-like protease kpc-1 [Caenorhabditis elegans]	KAI1721875.1 subtilase family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004252\|GO:0006508\|GO:0008236	GO:0008150_0.972\|GO:0009987_0.922\|GO:0005575_0.833\|GO:0110165_0.833\|GO:0065007_0.745\|GO:0003674_0.742\|GO:0016020_0.715\|GO:0071944_0.643\|GO:0008152_0.626\|GO:0044238_0.622\|GO:0043170_0.620\|GO:0005886_0.610\|GO:0009058_0.585\|GO:0044237_0.580\|GO:0005622_0.579\|GO:0044249_0.567\|GO:0032501_0.563\|GO:0009059_0.562\|GO:0050789_0.559\|GO:0010467_0.555\|GO:0019538_0.555\|GO:0003824_0.546\|GO:0043226_0.538\|GO:0032502_0.537\|GO:0048856_0.537\|GO:0140096_0.533\|GO:0016787_0.530\|GO:0043229_0.525\|GO:0008233_0.523\|GO:0006508_0.516\|GO:0043227_0.502\|GO:0043231_0.502	IPR000209+534-817+\|IPR002884+833-967_877-960+\|IPR008979+825-966+\|IPR015500+534-553_580-593_755-771+\|IPR022398+584-594+\|IPR023827+539-550+\|IPR023828+756-766+\|IPR032815+275-354+\|IPR034182+499-792+\|IPR036852+498-831_501-829+\|IPR038466+265-354+	—	PF00082+534-817+Subtilase_family\|PF01483+877-960+Proprotein_convertase_P-domain\|PF16470+275-354+Peptidase_S8_pro-domain	G3DSA:2.60.120.260:FF:000006+829-967+Proprotein_convertase_subtilisin/kexin_type_5\|G3DSA:3.30.70.850:FF:000001+265-354+Proprotein_convertase_subtilisin/kexin_type_5\|G3DSA:3.40.50.200:FF:000001+501-829+Furin_2,_isoform_B	PTHR42884+226-987+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-91;157-212;356-493;971-1074	3.000	92-156;213-355;494-970	1p8j_H	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.883	117792.420	8.050	33.500	25.885	12.291	51.210	48.790	15.829	10.056	57.914

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	greenyellow	1614.641	1494.055	2018.489	1046.790	1317.744	1728.540	2496.062	2164.218	658.149	1970.732	1408.196

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.205	-0.650	-0.839	0.300	0.406	0.539	—	—	—	—	—	—	—

No JSON data available for plots.

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