Hg_chrom9_TN10mRNA_18163
Organism: Heterodera glycines Gene Locus: chr9:8534830-8548116 Feature type: polypeptideProtein Sequence
Length: 1,458
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.324 | 0.941 | 1.048 | 0.497 | 0.812 | 1.636 | 0.955 | 1.235 | 0.625 | 1.057 | 0.447 | 1.21 | 0.819 | 1.306 | 1.26 | 1.264 | 1.203 | 0.831 | 0.58 | 0.484 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17172
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.893
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
RHRWSSRSNSRRRRK
|
21-42
|
0.983
|
49-75
|
0.999
|
1-24
|
— |
1.000
|
— |
0.000
|
0.235
|
0.201
|
0.026
|
0.235
|
0.048
|
0.027
|
0.082
|
0.132
|
0.230
|
0.864
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002587
|
1.000
|
3.000
|
Hsc_gene_13920.t1;Hsc_gene_13920.t2;Hsc_gene_13920.t3
|
— | — | — |
KAH7726598.1 PAN domain containing protein [Aphelenchus avenae]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003609+704-783_708-781_708-784_918-996_1006-1143+
|
SM00473+704-783_918-996_1006-1143+
|
PF00024+708-781+PAN_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
112-420;552-691;800-886;1155-1458
|
4.000
|
1-111;421-551;692-799;887-1154
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
156011.590
|
6.330
|
-4.000
|
22.222
|
7.819
|
48.834
|
51.166
|
11.591
|
10.631
|
59.122
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
1057.392
|
329.333
|
273.574
|
155.895
|
174.851
|
268.910
|
396.890
|
137.745
|
401.164
|
3673.767
|
2271.223
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.498
|
-1.216
|
-0.702
|
— |
0.637
|
0.571
|
-1.067
|
1.667
|
— | — |
-3.899
|
— | — |