Hg_chrom9_TN10mRNA_18166
Organism: Heterodera glycines Gene Locus: chr9:8561886-8565321 Feature type: polypeptideProtein Sequence
Length: 218
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.693 | 0.64 | 1.168 | 0.475 | 1.147 | 1.294 | 0.655 | 1.376 | 0.51 | 1.426 | 0.904 | 1.349 | 1.274 | 0.794 | 1.03 | 0.917 | 1.203 | 1.39 | 0.706 | 1.349 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17175
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — |
1-28
|
0.991
|
1.000
|
1.000
|
1.000
|
0.033
|
0.234
|
0.030
|
0.126
|
0.821
|
0.261
|
0.697
|
0.167
|
0.361
|
0.005
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013186
|
1.000
|
1.000
|
Hsc_gene_13923.t1
|
Hsc_gene_13923.t1;Hsc_gene_13936.t1;Hsc_gene_13937.t2;Hsc_gene_13947.t1;Hsc_gene_13948.t1
|
— |
D3ZTX0.1 Transmembrane emp24 domain-containing protein 7 [Rattus norvegicus]
|
KAF7638776.1 GOLD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.917|GO:0110165_0.914|GO:0016020_0.812|GO:0005622_0.795|GO:0071944_0.778|GO:0005886_0.754|GO:0005737_0.742|GO:0043226_0.709|GO:0043229_0.692|GO:0043227_0.678|GO:0043231_0.657|GO:0005773_0.617|GO:0012505_0.593|GO:0008150_0.586|GO:0009987_0.526
|
IPR009038+30-209_30-210_40-122+|IPR015720+9-210+|IPR036598+39-126+
|
SM01190+30-210+
|
PF01105+30-209+emp24/gp25L/p24_family/GOLD
|
— |
PTHR22811+9-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-218
|
7rrm_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
24779.140
|
5.944
|
-2.000
|
27.064
|
12.844
|
48.624
|
51.376
|
13.761
|
13.303
|
49.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
956.537
|
1046.716
|
1007.195
|
1214.221
|
1416.809
|
1287.366
|
1113.225
|
625.197
|
1025.010
|
524.569
|
739.044
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.285
|
— |
0.379
|
0.190
|
— |
-0.201
|
-1.146
|
0.973
|
— | — | — | — | — |