SCN Proteipedia

Hg_chrom9_TN10mRNA_18167

Organism: Heterodera glycines Gene Locus: chr9:8565641-8570893 Feature type: polypeptide

Protein Sequence

Length: 770

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.695	1.057	1.228	0.627	0.974	0.932	0.85	1.494	0.924	1.316	0.905	1.07	1.407	0.974	0.928	0.946	0.915	1.102	0.999	1.222	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17176	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.874

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	cytoplasm\|mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.177	0.881	0.085	0.479	0.070	0.186	0.161	0.064	0.117	0.077

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000377	6.000	2.000	Hsc_gene_13924.t1;Hsc_gene_21019.t1	Hsc_gene_13924.t1	—	P23687.1 Prolyl endopeptidase [Sus scrofa]	KAI1720431.1 prolyl oligopeptidase family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004252\|GO:0006508\|GO:0008236	GO:0008150_0.761\|GO:0003674_0.729\|GO:0005575_0.718\|GO:0110165_0.717\|GO:0003824_0.644\|GO:0005622_0.619\|GO:0005737_0.602\|GO:0008152_0.582\|GO:0016787_0.552\|GO:0140096_0.523\|GO:0008233_0.511\|GO:0043170_0.511\|GO:0016020_0.510	IPR001375+542-764+\|IPR002470+526-544_553-577_581-600_611-631_666-681_687-709+\|IPR002471+588-618+\|IPR023302+60-468+\|IPR029058+67-759_496-762+\|IPR051167+55-768+	—	PF00326+542-764+Prolyl_oligopeptidase_family\|PF02897+60-468+Prolyl_oligopeptidase,_N-terminal_beta-propeller_domain	G3DSA:2.130.10.120:FF:000001+126-482+Prolyl_endopeptidase\|G3DSA:3.40.50.1820:FF:000005+461-759+Prolyl_endopeptidase	PTHR42881+55-768+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-770	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.597	86658.240	6.186	-4.500	26.104	13.506	46.494	53.506	13.506	12.597	50.779

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	darkred	3302.056	2678.361	2266.197	4200.297	5016.833	4240.563	3697.818	3064.621	1110.338	4176.983	2862.706

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.470	0.512	0.999	0.224	-0.228	-0.187	-0.573	0.413	-2.025	2.097	—	—	—

No JSON data available for plots.

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