Hg_chrom9_TN10mRNA_18168
Organism: Heterodera glycines Gene Locus: chr9:8571841-8573755 Feature type: polypeptideProtein Sequence
Length: 263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 1.061 | 1.037 | 0.787 | 2.218 | 1.17 | 0.951 | 0.57 | 1.098 | 1.182 | 1.671 | 2.237 | 0.317 | 0.439 | 1.164 | 0.217 | 1.06 | 0.634 | 0.292 | 1.006 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17177
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RMDKRVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.533
|
0.225
|
0.012
|
0.589
|
0.123
|
0.170
|
0.214
|
0.022
|
0.140
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013187
|
1.000
|
1.000
|
Hsc_gene_13925.t1
|
Hsc_gene_13925.t1
|
— |
Q61D31.1 BAG family molecular chaperone regulator 1 [Caenorhabditis briggsae]
|
KAI1721876.1 BAG family molecular chaperone regulator 1 [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0051087
|
GO:0003674_0.709|GO:0005488_0.663|GO:0005575_0.636|GO:0110165_0.625|GO:0005515_0.615|GO:0005622_0.598|GO:0008150_0.592|GO:0009987_0.542|GO:0098772_0.517|GO:0005737_0.510
|
IPR003103+164-250+|IPR029071+84-134+|IPR036533+134-262+
|
SM00264+164-250+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-97
|
1.000
|
98-263
|
1t7s_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
29960.080
|
5.223
|
-4.500
|
36.882
|
6.084
|
53.992
|
46.008
|
17.871
|
19.011
|
41.825
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
801.974
|
332.454
|
748.134
|
897.922
|
1103.860
|
945.914
|
1054.645
|
769.128
|
884.297
|
650.893
|
750.923
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.940
|
1.296
|
0.373
|
0.265
|
-0.208
|
— |
-0.406
|
0.600
|
— | — | — | — | — |
No JSON data available for plots.