SCN Proteipedia

Hg_chrom9_TN10mRNA_18170

Organism: Heterodera glycines Gene Locus: chr9:8580908-8597260 Feature type: polypeptide

Protein Sequence

Length: 465

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.075	1.25	0.782	0.742	0.609	0.827	0.717	0.645	1.338	1.482	0.358	1.771	1.673	0.868	0.834	1.659	0.811	1.206	1.489	0.38	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17179	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	0.964

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum\|lysosome_vacuole	—	—	—	—	—	—	—	—	0.000	—	—	0.130	0.259	0.057	0.093	0.665	0.664	0.517	0.191	0.188	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013189	1.000	1.000	Hsc_gene_13927.t1	Hsc_gene_13927.t1;Hsc_gene_13929.t1;Hsc_gene_13929.t2	—	Q8N2U9.1 Solute carrier family 66 member 2 [Homo sapiens]	KAI6208802.1 PQ-loop repeat-containing protein 1 [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.963\|GO:0005575_0.928\|GO:0110165_0.927\|GO:0009987_0.916\|GO:0016020_0.888\|GO:0071944_0.888\|GO:0005886_0.886\|GO:0051179_0.863\|GO:0006810_0.861\|GO:0051234_0.861\|GO:0065007_0.847\|GO:0005622_0.774\|GO:0005737_0.752\|GO:0016043_0.738\|GO:0065008_0.738\|GO:0071840_0.738\|GO:0043226_0.734\|GO:0051641_0.718\|GO:0005773_0.715\|GO:0043227_0.715\|GO:0043229_0.715\|GO:0043231_0.715\|GO:0051649_0.699\|GO:0061024_0.696\|GO:0033036_0.694\|GO:0012505_0.689\|GO:0016192_0.688\|GO:0046907_0.683\|GO:0010876_0.681\|GO:0006869_0.678\|GO:0015748_0.675\|GO:0005829_0.674\|GO:0016482_0.674\|GO:0015914_0.670\|GO:0016197_0.670\|GO:0034204_0.670\|GO:0042147_0.670\|GO:0045332_0.670\|GO:0097035_0.670\|GO:0031090_0.617\|GO:0031982_0.608\|GO:0005783_0.602\|GO:0098588_0.598\|GO:0031410_0.582\|GO:0097708_0.582\|GO:0005794_0.577\|GO:0031984_0.575\|GO:0012506_0.561\|GO:0030659_0.559\|GO:0005768_0.557\|GO:0098791_0.555\|GO:0005802_0.553\|GO:0010008_0.547\|GO:0032588_0.545	IPR006603+172-224_179-210_302-360_315-346+\|IPR052241+265-385+	SM00679+179-210_315-346+	PF04193+172-224_302-360+PQ_loop_repeat	G3DSA:1.20.1280.290:FF:000005+299-388+PQ-loop_repeat-containing_protein_1\|G3DSA:1.20.1280.290:FF:000008+161-256+PQ-loop_repeat-containing_protein_1	PTHR14856+265-385+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	462-465	1.000	1-461	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.769	50462.070	5.396	-4.000	15.699	10.538	40.860	59.140	7.742	7.957	56.129

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	lightcyan	1650.710	1948.301	1738.883	1743.127	1759.204	3120.726	1527.631	1907.024	565.704	1643.245	1181.441

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.393	-0.298	0.112	—	0.842	-1.024	-0.811	—	—	—	—	—	—

No JSON data available for plots.

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