Hg_chrom9_TN10mRNA_18171
Organism: Heterodera glycines Gene Locus: chr9:8587133-8591983 Feature type: polypeptideProtein Sequence
Length: 998
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.804 | 1.258 | 0.692 | 0.691 | 0.885 | 1.156 | 0.859 | 1.052 | 1.069 | 1.11 | 0.82 | 1.65 | 0.835 | 0.732 | 1.902 | 1.145 | 1.331 | 0.941 | 1.002 | 0.501 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17180
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKRR,RKAPLLFAAFKRMKA,RKPPDARTIHRIGRKRQQ,KKWQKEKQQRGGRGRRRHS,RKRERGNRSRSPTAERRREVRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.122
|
0.107
|
0.010
|
0.154
|
0.290
|
0.370
|
0.270
|
0.008
|
0.877
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005022
|
1.000
|
2.000
|
Hsc_gene_13928.t1;Hsc_gene_13928.t2
|
— | — |
P79748.1 5-hydroxytryptamine receptor 1D [Takifugu rubripes]
|
KAI1721878.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.976|GO:0009987_0.932|GO:0005575_0.914|GO:0110165_0.914|GO:0065007_0.901|GO:0050789_0.885|GO:0050794_0.866|GO:0007154_0.849|GO:0023052_0.844|GO:0016020_0.818|GO:0050896_0.802|GO:0051716_0.791|GO:0003674_0.788|GO:0071944_0.767|GO:0005886_0.766|GO:0007165_0.748|GO:0005622_0.685|GO:0023051_0.682|GO:0007186_0.679|GO:0010646_0.674|GO:0032501_0.598|GO:0004888_0.566|GO:0038023_0.566|GO:0060089_0.566|GO:0048583_0.556|GO:0009966_0.548|GO:0005488_0.538|GO:0048519_0.524
|
IPR000276+56-80_72-348_87-108_132-154_138-154_211-234_293-317_330-356+|IPR017452+68-348+
|
— |
PF00001+72-348+7_transmembrane_receptor_(rhodopsin_family)
|
G3DSA:1.20.1070.10:FF:000469+42-372+SERotonin/octopamine_receptor_family
|
PTHR24248+55-364+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
386-998
|
1.000
|
1-385
|
9bsb_R
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
111550.340
|
10.605
|
66.500
|
25.952
|
8.116
|
52.004
|
47.996
|
16.834
|
9.118
|
51.503
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.