Hg_chrom1_TN10mRNA_1093
Organism: Heterodera glycines Gene Locus: chr1:12962122-12978163 Feature type: polypeptideProtein Sequence
Length: 3,101
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.832 | 0.997 | 0.868 | 0.934 | 1.247 | 1.389 | 0.626 | 1.371 | 0.989 | 1.586 | 0.752 | 1.442 | 1.254 | 0.732 | 1.468 | 1.046 | 0.756 | 0.904 | 0.719 | 0.654 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1041
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRRRTLLGMAGSRRGKG,KKSDGEKCDGREKWRRT
|
6-33
|
0.997
|
12-33
|
0.993
|
— | — |
0.000
|
— | — |
0.087
|
0.121
|
0.024
|
0.358
|
0.421
|
0.278
|
0.173
|
0.005
|
0.544
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003020
|
1.000
|
2.000
|
Hsc_gene_21184.t1;Hsc_gene_21184.t2
|
Hsc_gene_21184.t1;Hsc_gene_21184.t2;Hsc_gene_21185.t1
|
— |
Q9Y0A1.1 Inositol 1,4,5-trisphosphate receptor itr-1 [Caenorhabditis elegans]
|
KAI1695948.1 inositol 1,4,5-trisphosphate/ryanodine receptor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005220|GO:0005262|GO:0005783|GO:0006811|GO:0006816|GO:0016020|GO:0055085|GO:0070588|GO:0070679
|
GO:0005575_0.942|GO:0110165_0.942|GO:0016020_0.906|GO:0005886_0.903|GO:0071944_0.903|GO:0008150_0.862|GO:0009987_0.838|GO:0005622_0.835|GO:0043226_0.800|GO:0065007_0.788|GO:0050789_0.772|GO:0043229_0.765|GO:0003674_0.761|GO:0043227_0.754|GO:0050794_0.750|GO:0005737_0.746|GO:0043231_0.724|GO:0005773_0.719|GO:0012505_0.711|GO:0051179_0.695|GO:0006810_0.682|GO:0051234_0.682|GO:0005488_0.680|GO:0050896_0.648|GO:0051716_0.631|GO:0007154_0.615|GO:0023052_0.611|GO:0005783_0.596|GO:0007165_0.587|GO:0055085_0.566|GO:0006811_0.548|GO:0034220_0.545|GO:0098660_0.524|GO:0006812_0.522|GO:0030001_0.519|GO:0005215_0.518|GO:0005216_0.518|GO:0015075_0.518|GO:0015267_0.518|GO:0022803_0.518|GO:0022857_0.518|GO:0098655_0.516|GO:0031090_0.515|GO:0035556_0.513|GO:0098662_0.508|GO:0141124_0.507
|
IPR000493+78-101_158-177_278-298_336-360_480-505_616-638_648-672_827-848_928-953+|IPR000699+531-732_1412-1553+|IPR005821+2769-2972+|IPR013662+2234-2340+|IPR014821+28-272+|IPR015925+28-3089+|IPR016093+140-194_274-332_278-488_341-398+|IPR035910+493-664_1383-1467+|IPR036300+136-255_280-491+
|
SM00472+140-194_274-332_341-398+
|
PF00520+2769-2972+Ion_transport_protein|PF01365+531-732_1412-1553+RIH_domain|PF02815+278-488+MIR_domain|PF08454+2234-2340+RyR_and_IP3R_Homology_associated|PF08709+28-272+Inositol_1,4,5-trisphosphate/ryanodine_receptor
|
G3DSA:1.25.10.30:FF:000003+491-661+Protein_CBR-ITR-1,_isoform_a
|
PTHR13715+28-3089+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1269-1312;2131-2228;2420-2484;3101-3101
|
4.000
|
1-1268;1313-2130;2229-2419;2485-3100
|
3t8s_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
351740.710
|
7.395
|
39.500
|
27.153
|
10.416
|
48.791
|
51.209
|
14.898
|
12.254
|
45.888
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3747.061
|
5244.728
|
3834.764
|
2575.559
|
2619.456
|
3082.822
|
3680.774
|
6840.267
|
1713.931
|
4653.557
|
3393.717
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.682
|
-1.163
|
-0.465
|
— |
0.249
|
0.266
|
1.041
|
-0.751
|
— | — | — | — | — |
No JSON data available for plots.