SCN Proteipedia

Hg_chrom1_TN10mRNA_1466

Organism: Heterodera glycines Gene Locus: chr1:14400666-14406417 Feature type: polypeptide

Protein Sequence

Length: 1,193

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.955	0.994	0.701	0.202	0.81	2.02	0.808	1.718	1.062	0.918	0.902	1.529	0.792	1.467	0.958	1.521	1.223	0.686	0.322	0.518	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1402	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.982

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	PKPS	—	—	74-94	0.948	—	—	0.000	—	—	0.363	0.170	0.015	0.628	0.164	0.202	0.249	0.031	0.488	0.047

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003066	1.000	2.000	Hsc_gene_2472.t1;Hsc_gene_2472.t2	Hsc_gene_2472.t1;Hsc_gene_2472.t2	—	A8WYE4.1 Serine/threonine-protein kinase par-1 [Caenorhabditis briggsae]	KAI1720690.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.951\|GO:0009987_0.913\|GO:0005575_0.901\|GO:0110165_0.898\|GO:0065007_0.848\|GO:0050789_0.845\|GO:0050794_0.841\|GO:0003674_0.824\|GO:0003824_0.824\|GO:0004672_0.824\|GO:0016301_0.824\|GO:0016740_0.824\|GO:0016772_0.824\|GO:0016773_0.824\|GO:0140096_0.824\|GO:0005622_0.818\|GO:0004674_0.810\|GO:0005488_0.731\|GO:0050896_0.712\|GO:0008152_0.708\|GO:0043170_0.708\|GO:0044237_0.690\|GO:0051716_0.687\|GO:0005737_0.674\|GO:0044238_0.662\|GO:0007154_0.652\|GO:0023052_0.650\|GO:0007165_0.646\|GO:0043226_0.637\|GO:0006793_0.635\|GO:0006796_0.635\|GO:0019538_0.628\|GO:0036211_0.622\|GO:0043412_0.622\|GO:0016020_0.620\|GO:0006468_0.616\|GO:0016310_0.616\|GO:0032501_0.600\|GO:0032502_0.592\|GO:0048856_0.587\|GO:0043229_0.585\|GO:0005515_0.565\|GO:0035556_0.555\|GO:0016043_0.515\|GO:0071840_0.515\|GO:0048518_0.509\|GO:0071944_0.506\|GO:0048522_0.503	IPR000719+213-464+\|IPR001772+1144-1193_1151-1193+\|IPR008271+331-343+\|IPR011009+210-616+\|IPR017441+219-242+\|IPR028375+1089-1193+\|IPR049508+212-464+	SM00220+213-464+	PF00069+213-464+Protein_kinase_domain\|PF02149+1151-1193+Kinase_associated_domain_1	G3DSA:1.10.510.10:FF:001032+208-539+KP78b,_isoform_A\|G3DSA:3.30.200.20:FF:000003+197-293+Non-specific_serine/threonine_protein_kinase\|G3DSA:3.30.310.80:FF:000001+1083-1193+Non-specific_serine/threonine_protein_kinase	PTHR24346+157-631+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-214;515-1100	2.000	215-514;1101-1193	3iec_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.938	129735.710	9.867	43.500	22.800	8.466	53.060	46.940	14.082	8.718	53.982

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	paleturquoise	3717.083	5714.684	4769.302	3217.042	2715.675	4104.968	3595.317	5908.016	4282.327	1791.118	2858.779

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.489	-0.966	-0.460	-0.276	0.611	-0.181	0.421	-0.575	—	—	—	—	—

No JSON data available for plots.

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