Hg_chrom1_TN10mRNA_1700
Organism: Heterodera glycines Gene Locus: chr1:15151093-15152584 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.903 | 1.355 | 1.147 | 1.172 | 1.537 | 1.369 | 0.52 | 1.942 | 1.079 | 1.246 | 0.368 | 1.999 | 2.157 | 0.934 | 0.892 | 0.763 | 0.557 | 0.662 | 0.373 | 0.999 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1633
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.945
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.445
|
0.640
|
0.017
|
0.523
|
0.087
|
0.048
|
0.132
|
0.089
|
0.063
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001730
|
3.000
|
1.000
|
Hsc_gene_14891.t1
|
— | — |
D3ZRW8.1 Ethanolamine kinase 2 [Rattus norvegicus]
|
KAH7718464.1 choline/ethanolamine kinase [Aphelenchus avenae]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.888|GO:0009987_0.772|GO:0003674_0.712|GO:0008152_0.691|GO:0044238_0.667|GO:0044237_0.652|GO:0009058_0.643|GO:0003824_0.608|GO:0006793_0.602|GO:0006796_0.602|GO:0006629_0.586|GO:0019637_0.585|GO:0008610_0.582|GO:0044255_0.581|GO:0090407_0.578|GO:0044249_0.577|GO:0006644_0.576|GO:0008654_0.575|GO:0005575_0.566|GO:0110165_0.563|GO:0016740_0.556|GO:0046486_0.528|GO:0006650_0.526|GO:0045017_0.525|GO:0046474_0.525|GO:0016772_0.517|GO:0016301_0.513|GO:0016773_0.512
|
IPR011009+1-174+
|
— |
PF01633+1-126+Choline/ethanolamine_kinase
|
— |
PTHR22603+1-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
23674.630
|
4.371
|
-14.000
|
26.214
|
15.534
|
46.117
|
53.883
|
10.680
|
15.534
|
45.631
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
2666.630
|
126.491
|
260.292
|
287.859
|
438.772
|
352.651
|
441.845
|
289.706
|
374.568
|
10561.472
|
6195.656
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
1.049
|
0.253
|
0.577
|
-0.300
|
0.333
|
— |
0.751
|
-2.908
|
— |
-2.479
|
— | — |
No JSON data available for plots.