SCN Proteipedia

Hg_chrom1_TN10mRNA_2232

Organism: Heterodera glycines Gene Locus: chr1:18466672-18469320 Feature type: polypeptide

Protein Sequence

Length: 358

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.455	1.039	0.762	1.156	1.629	1.003	0.565	1.536	1.304	1.246	0.973	2.958	1.319	0.859	1.653	0.838	0.412	1.185	0.645	0.493	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_2147	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.985

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.303	0.922	0.022	0.224	0.024	0.025	0.021	0.041	0.068	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006500	1.000	1.000	Hsc_gene_26179.t1	Hsc_gene_26179.t1	—	O95900.1 Pseudouridylate synthase TRUB2, mitochondrial [Homo sapiens]	KAF7638553.1 TruB_N domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0001522\|GO:0003723\|GO:0006396\|GO:0009451\|GO:0009982	GO:0008150_0.938\|GO:0005575_0.885\|GO:0009987_0.880\|GO:0110165_0.878\|GO:0005622_0.854\|GO:0003674_0.850\|GO:0065007_0.840\|GO:0050789_0.831\|GO:0050794_0.815\|GO:0008152_0.811\|GO:0016020_0.809\|GO:0043226_0.801\|GO:0005488_0.800\|GO:0044238_0.796\|GO:0044237_0.787\|GO:0043229_0.784\|GO:0009058_0.781\|GO:0043170_0.778\|GO:0005737_0.774\|GO:0044249_0.764\|GO:0043227_0.760\|GO:0009059_0.753\|GO:0048518_0.748\|GO:0006139_0.747\|GO:0019222_0.745\|GO:0010467_0.743\|GO:0019538_0.739\|GO:0043231_0.738\|GO:0031323_0.736\|GO:0048522_0.732\|GO:0003824_0.730\|GO:0060255_0.729\|GO:0080090_0.728\|GO:0090304_0.727\|GO:0009889_0.718\|GO:0031326_0.717\|GO:0010556_0.716\|GO:0016070_0.715\|GO:0010468_0.713\|GO:0009893_0.709\|GO:0043412_0.704\|GO:0031325_0.703\|GO:0010604_0.700\|GO:0097159_0.699\|GO:0009891_0.698\|GO:0031328_0.696\|GO:0010557_0.693\|GO:0051246_0.690\|GO:0010628_0.684\|GO:0003676_0.683\|GO:0006412_0.682\|GO:0006414_0.682\|GO:0016071_0.678\|GO:0010608_0.676\|GO:0051247_0.676\|GO:0006417_0.674\|GO:0001522_0.670\|GO:0005739_0.670\|GO:0009451_0.670\|GO:0016556_0.670\|GO:0032543_0.670\|GO:0045727_0.670\|GO:0062125_0.670\|GO:0070129_0.670\|GO:0070131_0.670\|GO:0140053_0.670\|GO:1990481_0.670\|GO:0003723_0.667\|GO:0009982_0.650\|GO:0016853_0.650\|GO:0016866_0.650\|GO:0043228_0.632\|GO:0043232_0.632\|GO:0099080_0.574\|GO:0035770_0.546	IPR002501+104-234+\|IPR020103+14-296+\|IPR039048+10-321+	—	PF01509+104-234+TruB_family_pseudouridylate_synthase_(N_terminal_domain)	—	PTHR13195+10-321+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-358	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.642	41651.460	7.767	7.500	31.564	10.335	48.324	51.676	17.598	13.966	41.341

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1189.698	564.069	434.041	370.863	476.900	470.219	872.010	364.980	3728.466	1076.175	2212.871

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.608	-0.742	—	0.331	—	0.902	-0.473	1.401	—	—	—	—	—

No JSON data available for plots.

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