Hg_chrom1_TN10mRNA_237
Organism: Heterodera glycines Gene Locus: chr1:1757156-1760925 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.596 | 1.06 | 0.414 | 0.884 | 0.57 | 0.95 | 0.509 | 1.567 | 1.773 | 1.579 | 0.389 | 1.341 | 2.216 | 0.822 | 1.105 | 1.14 | 0.887 | 0.95 | 1.753 | 2.011 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_229
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.541
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRQLSAVVSELSAVKRKTF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.129
|
0.048
|
0.025
|
0.100
|
0.372
|
0.117
|
0.149
|
0.070
|
0.903
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002897
|
2.000
|
1.000
|
Hsc_gene_17157.t1
|
Hsc_gene_17858.t1
|
— | — |
KAI3408695.1 Serpentine type 7TM GPCR chemoreceptor Srt, variant 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019425+7-312_12-313+
|
— |
PF10321+7-312+Serpentine_type_7TM_GPCR_chemoreceptor_Srt
|
— |
PTHR23021+12-313+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
330-351
|
1.000
|
1-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
41053.870
|
8.783
|
13.500
|
16.809
|
20.228
|
38.462
|
61.538
|
11.111
|
5.698
|
42.735
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
140.922
|
17.513
|
79.527
|
10.758
|
7.038
|
7.458
|
11.343
|
54.510
|
20.349
|
530.716
|
311.987
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.958
|
-0.840
|
-2.781
|
— | — | — |
2.777
|
-2.131
|
-4.830
|
— |
-6.035
|
— | — |
No JSON data available for plots.