Hg_chrom2_TN10mRNA_2377
Organism: Heterodera glycines Gene Locus: chr2:428744-430341 Feature type: polypeptideProtein Sequence
Length: 253
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.149 | 1.287 | 0.575 | 1.09 | 0.791 | 0.912 | 0.8 | 1.186 | 1.757 | 1.389 | 0.599 | 1.628 | 2.525 | 0.456 | 0.323 | 1.073 | 0.713 | 0.958 | 0.912 | 1.046 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2280
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2377
|
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.003
|
— | — |
0.162
|
0.148
|
0.045
|
0.209
|
0.689
|
0.223
|
0.156
|
0.036
|
0.463
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003172
|
2.000
|
1.000
|
Hsc_gene_26046.t1
|
Hsc_gene_26046.t1
|
— | — |
KAI1698609.1 aquaporin-11 [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.942|GO:0050896_0.772|GO:0006950_0.718|GO:0044419_0.695|GO:0009605_0.692|GO:0009607_0.688|GO:0043207_0.687|GO:0051707_0.686|GO:0006952_0.681|GO:0002376_0.679|GO:0098542_0.678|GO:0006955_0.675|GO:0045087_0.674|GO:0140546_0.674
|
IPR016697+4-245+|IPR023271+12-227_16-214+|IPR051883+13-225+
|
— | — | — |
PTHR21191+13-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-253
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
28011.470
|
5.539
|
-3.000
|
15.810
|
16.206
|
36.759
|
63.241
|
7.905
|
7.905
|
49.012
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
106.983
|
8.184
|
224.184
|
26.767
|
7.359
|
47.198
|
7.287
|
252.253
|
2.764
|
251.017
|
144.623
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.545
|
1.573
|
-2.956
|
-1.896
|
2.697
|
-2.689
|
2.317
|
-4.976
|
— | — | — | — | — |
No JSON data available for plots.