SCN Proteipedia

Hg_chrom2_TN10mRNA_2738

Organism: Heterodera glycines Gene Locus: chr2:2524298-2539373 Feature type: polypeptide

Protein Sequence

Length: 1,555

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.957	1.017	1.415	0.155	1.35	1.517	0.773	1.061	1.3	1.191	0.867	1.021	1.054	0.903	1.273	0.597	1.044	0.906	0.396	0.775	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2607	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.362

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.238	0.140	0.011	0.655	0.060	0.294	0.114	0.023	0.334	0.322

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006640	1.000	1.000	Hsc_gene_26629.t1	Hsc_gene_26629.t1;Hsc_gene_386.t1;Hsc_gene_386.t2;Hsc_gene_390.t1;Hsc_gene_390.t2	—	O35640.2 Annexin A8 [Mus musculus]	XP_019866582.1 annexin B11 isoform X2 [Aethina tumida];XP_049823559.1 annexin B11 isoform X2 [Aethina tumida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005544\|GO:0005737\|GO:0006516	GO:0005575_0.898\|GO:0110165_0.892\|GO:0008150_0.798\|GO:0016020_0.769\|GO:0005622_0.755\|GO:0003674_0.751\|GO:0009987_0.721\|GO:0043226_0.712\|GO:0071944_0.690\|GO:0005737_0.652\|GO:0005488_0.650\|GO:0043227_0.634\|GO:0005886_0.602\|GO:0043229_0.586\|GO:0043231_0.530\|GO:0065007_0.528\|GO:0051179_0.525\|GO:0050789_0.502	IPR001464+1252-1274_1321-1342_1404-1430_1482-1502+\|IPR006588+9-193_858-1025+\|IPR008979+9-122_863-1035+\|IPR018252+1329-1381+\|IPR018502+1224-1311_1255-1309_1312-1383_1318-1379_1329-1381_1395-1467_1399-1461_1413-1465_1471-1541_1488-1539+\|IPR037104+1226-1314_1253-1543_1315-1384_1386-1471_1472-1540+\|IPR038680+2-199_200-402_430-633_855-1042+	SM00335+1255-1309_1329-1381_1413-1465_1488-1539+	PF00191+1318-1379_1399-1461+Annexin\|PF04721+9-193_858-1025+PNGase_C-terminal_domain,_mannose-binding_module_PAW	G3DSA:1.10.220.10:FF:000002+1387-1471+Annexin\|G3DSA:1.10.220.10:FF:000003+1312-1386+Annexin	PTHR10502+1224-1539+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	346-436;620-670;1099-1233;1536-1555	4.000	1-345;437-619;671-1098;1234-1535	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.670	174609.230	4.891	-44.500	29.968	9.068	50.804	49.196	14.084	15.884	48.553

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	4316.284	15913.613	5503.175	1684.295	9022.670	1811.543	1209.991	10544.524	393.978	1454.581	1000.037

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.759	-3.377	-1.601	2.390	-2.301	-0.572	2.443	-2.984	—	—	2.888	—	—

No JSON data available for plots.

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