Hg_chrom2_TN10mRNA_3086
Organism: Heterodera glycines Gene Locus: chr2:5203232-5204015 Feature type: polypeptideProtein Sequence
Length: 72
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.323 | 1.615 | 0.253 | 1.437 | 1.157 | 2.137 | 1.323 | 1.389 | 0.926 | 0.188 | 0.631 | 3.268 | 1.157 | 1.068 | 0.283 | 0.992 | 1.138 | 1.894 | 1.068 | 0.408 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2947
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.722
|
0.484
|
0.082
|
0.443
|
0.444
|
0.207
|
0.118
|
0.151
|
0.364
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_17124.t1;Hsc_gene_17128.t1
|
— |
Q4G338.1 Peptidyl-prolyl cis-trans isomerase E [Haemonchus contortus]
|
KIH58875.1 peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Ancylostoma duodenale]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755
|
GO:0005575_0.843|GO:0110165_0.828|GO:0005622_0.649|GO:0008150_0.637|GO:0005737_0.566|GO:0003674_0.561|GO:0016020_0.542
|
IPR002130+1-70_2-69_3-18_18-30_31-46+|IPR029000+1-72_2-71+
|
— |
PF00160+2-69+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
— |
PTHR11071+2-71+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-72
|
8ro0_y
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
7830.870
|
5.537
|
-1.000
|
16.667
|
9.722
|
45.833
|
54.167
|
8.333
|
8.333
|
58.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
34.015
|
27.815
|
14.329
|
22.817
|
24.616
|
14.830
|
36.620
|
27.316
|
2.410
|
83.881
|
48.965
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.192
|
— |
0.784
|
— |
-0.718
|
1.317
|
0.773
|
0.568
|
-5.258
|
3.486
|
— | — | — |
No JSON data available for plots.