Hg_chrom2_TN10mRNA_3087
Organism: Heterodera glycines Gene Locus: chr2:5207045-5208854 Feature type: polypeptideProtein Sequence
Length: 199
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.76 | 1.753 | 0.64 | 0.347 | 1.34 | 0.644 | 0.957 | 1.759 | 1.34 | 0.747 | 1.066 | 2.069 | 1.396 | 0.773 | 1.538 | 1.005 | 0.741 | 0.838 | 1.933 | 0.296 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2948
|
— | — |
1.444
|
1.000
|
5.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRK,KRSMKGSHTCVHTIWRHRR,RKLNNNNNGIGSAEEKERK
|
19-49
|
0.961
|
14-52
|
0.924
|
— | — |
0.149
|
— | — |
0.401
|
0.099
|
0.217
|
0.482
|
0.310
|
0.096
|
0.143
|
0.162
|
0.085
|
0.347
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003274
|
2.000
|
1.000
|
Hsc_gene_17122.t1
|
Hsc_gene_17122.t1;Hsc_gene_17124.t1;Hsc_gene_17126.t1;Hsc_gene_17128.t1;Hsc_gene_3912.t1;Hsc_gene_3914.t1
|
— |
Q4G338.1 Peptidyl-prolyl cis-trans isomerase E [Haemonchus contortus]
|
KAH7709343.1 cyclophilin-type peptidyl-prolyl cis-trans isomerase-13 [Aphelenchus avenae]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.857|GO:0110165_0.850|GO:0008150_0.767|GO:0005622_0.756|GO:0016020_0.755|GO:0043226_0.699|GO:0043229_0.678|GO:0043227_0.674|GO:0043231_0.646|GO:0003674_0.644|GO:0009987_0.599|GO:0008152_0.585|GO:0005488_0.569|GO:0044238_0.566|GO:0043170_0.553|GO:0044237_0.513|GO:0009058_0.509
|
IPR000504+18-93_52-91_53-97+|IPR012677+30-132+|IPR035979+51-107+
|
SM00360+18-93+
|
PF00076+52-91+RNA_recognition_motif
|
— |
PTHR48037+51-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
150-199
|
1.000
|
1-149
|
8ro0_y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
22628.700
|
10.041
|
9.500
|
29.648
|
12.060
|
51.256
|
48.744
|
18.090
|
11.558
|
47.739
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
348.387
|
333.337
|
198.110
|
160.517
|
112.942
|
110.191
|
72.511
|
132.694
|
77.103
|
1046.251
|
630.902
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.979
|
-1.192
|
-0.196
|
-0.537
|
— |
-0.594
|
— |
-0.730
|
-3.852
|
— | — | — | — |
No JSON data available for plots.