Hg_chrom2_TN10mRNA_4063
Organism: Heterodera glycines Gene Locus: chr2:9473890-9479831 Feature type: polypeptideProtein Sequence
Length: 558
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 0.792 | 0.782 | 0.371 | 2.18 | 1.195 | 0.939 | 0.986 | 0.518 | 0.896 | 1.14 | 1.16 | 1.145 | 1.344 | 2.231 | 0.896 | 0.764 | 0.625 | 0.827 | 0.422 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3852
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKSK,PQVKRAK,GRQRMGPKRKRKG,KRQKFSSIEHLLREEKRRD,KRRDEENGGRGEERIRRKR,RRDEENGGRGEERIRRKRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.895
|
0.097
|
0.004
|
0.198
|
0.036
|
0.014
|
0.041
|
0.018
|
0.034
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001869
|
1.000
|
3.000
|
Hsc_gene_4574.t1;Hsc_gene_4574.t2;Hsc_gene_4574.t3
|
Hsc_gene_4574.t1;Hsc_gene_4574.t2
|
— |
Q8UW76.1 T-box transcription factor TBX20 [Gallus gallus]
|
XP_042935450.1 T-box protein 12, putative [Brugia malayi];CDP92655.1 BMA-MAB-9, isoform a [Brugia malayi];VIO95096.1 T-box protein 12, putative [Brugia malayi]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0005634|GO:0006355|GO:0045893
|
GO:0008150_0.923|GO:0009987_0.810|GO:0065007_0.800|GO:0050789_0.781|GO:0050794_0.770|GO:0032502_0.734|GO:0048856_0.734|GO:0005575_0.711|GO:0110165_0.708|GO:0032501_0.674|GO:0005622_0.673|GO:0007275_0.640|GO:0043226_0.636|GO:0003674_0.629|GO:0005488_0.629|GO:0048731_0.628|GO:0016020_0.618|GO:0043229_0.616|GO:0008152_0.613|GO:0043170_0.613|GO:0019222_0.606|GO:0009058_0.599|GO:0009059_0.599|GO:0044237_0.599|GO:0044249_0.599|GO:0010467_0.595|GO:0031323_0.587|GO:0060255_0.586|GO:0009889_0.568|GO:0010468_0.566|GO:0010556_0.566|GO:0031326_0.566|GO:0044238_0.565|GO:0080090_0.559|GO:0048513_0.554|GO:0006139_0.553|GO:0090304_0.549|GO:0009653_0.548|GO:0016070_0.543|GO:0043227_0.539|GO:0034654_0.538|GO:0141187_0.538|GO:0032774_0.533|GO:0019219_0.513|GO:0051252_0.510|GO:0006351_0.504
|
IPR001699+157-533+|IPR008967+218-430+|IPR036960+208-428+|IPR046360+217-432_220-427_222-427_235-259_305-318_322-331_343-357+
|
SM00425+217-432+
|
PF00907+220-427+T-box
|
— |
PTHR11267+157-533+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-213;416-558
|
1.000
|
214-415
|
4a04_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
64109.710
|
8.858
|
11.500
|
37.814
|
8.602
|
56.810
|
43.190
|
20.430
|
17.384
|
44.265
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
234.055
|
159.794
|
294.199
|
195.913
|
70.077
|
43.312
|
123.648
|
86.162
|
8.925
|
652.385
|
376.616
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
— |
-0.477
|
-1.516
|
-0.679
|
1.525
|
0.892
|
0.662
|
— |
4.710
|
— | — | — |
No JSON data available for plots.