SCN Proteipedia

Hg_chrom2_TN10mRNA_4125

Organism: Heterodera glycines Gene Locus: chr2:9720378-9723548 Feature type: polypeptide

Protein Sequence

Length: 560

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.017	0.997	1.006	0.862	1.339	0.916	0.616	1.429	0.952	1.182	1.055	1.471	1.24	0.79	1.531	1.122	0.79	0.785	0.687	0.578	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3912	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	GRKGPKKKGSAKR	—	—	—	—	—	—	0.000	—	—	0.892	0.101	0.015	0.229	0.023	0.065	0.050	0.008	0.087	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007242	1.000	1.000	Hsc_gene_4519.t1	Hsc_gene_4519.t1	—	Q9JI69.1 Origin recognition complex subunit 1 [Cricetulus griseus]	KAF7635552.1 Origin recognition complex subunit 1 [Meloidogyne graminicola]	No	-0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016887	GO:0008150_0.859\|GO:0005575_0.768\|GO:0009987_0.763\|GO:0110165_0.760\|GO:0005622_0.715\|GO:0003674_0.694\|GO:0043226_0.660\|GO:0016020_0.653\|GO:0005488_0.649\|GO:0043229_0.647\|GO:0008152_0.629\|GO:0044238_0.613\|GO:0044237_0.611\|GO:0043170_0.606\|GO:0009058_0.605\|GO:0043227_0.587\|GO:0044249_0.583\|GO:0009059_0.579\|GO:0006139_0.571\|GO:0065007_0.568\|GO:0043231_0.563\|GO:0050789_0.561\|GO:0034654_0.558\|GO:0090304_0.555\|GO:0141187_0.548\|GO:0050794_0.519	IPR000953+34-87_35-94+\|IPR003593+203-357+\|IPR003959+208-350+\|IPR015163+452-538+\|IPR016197+31-87+\|IPR023780+35-84+\|IPR027417+156-360_164-417+\|IPR050311+96-545+\|IPR054425+362-415+	SM00298+34-87+\|SM00382+203-357+	PF00004+208-350+ATPase_family_associated_with_various_cellular_activities_(AAA)\|PF00385+35-84+Chromo_(CHRromatin_Organisation_MOdifier)_domain\|PF09079+452-538+CDC6,_C_terminal_winged_helix_domain\|PF22606+362-415+Cdc6/ORC-like,_ATPase_lid_domain	—	PTHR10763+96-545+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-172;560-560	1.000	173-559	3i90_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.725	63203.850	8.150	13.000	30.893	10.179	51.429	48.571	17.321	13.571	48.214

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	saddlebrown	943.278	1479.781	874.970	827.403	919.895	823.105	1300.049	934.151	475.619	1085.368	824.047

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.989	-0.976	—	—	—	0.670	—	0.619	—	—	—	—	—

No JSON data available for plots.

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