Hg_chrom2_TN10mRNA_4150
Organism: Heterodera glycines Gene Locus: chr2:9813080-9814410 Feature type: polypeptideProtein Sequence
Length: 192
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.211 | 0.363 | 0.568 | 1.078 | 0.521 | 0.534 | 0.558 | 2.083 | 0.579 | 2.041 | 0.473 | 1.532 | 1.591 | 1.002 | 2.551 | 1.042 | 0.683 | 0.947 | 1.603 | 0.306 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3936
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.853
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
endoplasmic_reticulum
|
chloroplast
|
— |
17-108
|
0.985
|
3-32
|
0.928
|
1-21
|
0.976
|
1.000
|
2.000
|
2.000
|
0.217
|
0.143
|
0.015
|
0.206
|
0.745
|
0.438
|
0.220
|
0.084
|
0.141
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000391
|
7.000
|
1.000
|
Hsc_gene_11323.t1
|
Hsc_gene_11323.t1
|
— |
Q5R8K7.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Pongo abelii]
|
KAH7701676.1 phospholipase D family protein [Aphelenchus avenae]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.910|GO:0110165_0.910|GO:0016020_0.873|GO:0005622_0.773|GO:0043226_0.748|GO:0005737_0.737|GO:0043229_0.735|GO:0043227_0.727|GO:0043231_0.718|GO:0005739_0.560
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-192
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
21888.850
|
11.753
|
22.000
|
26.042
|
13.021
|
41.146
|
58.854
|
19.792
|
6.250
|
45.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
purple
|
51.338
|
42.734
|
31.018
|
28.258
|
25.064
|
17.153
|
77.813
|
49.927
|
6.734
|
117.565
|
70.066
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.695
|
-0.733
|
— | — | — |
2.192
|
1.437
|
0.783
|
-4.298
|
— | — | — | — |