SCN Proteipedia

Hg_chrom2_TN10mRNA_4363

Organism: Heterodera glycines Gene Locus: chr2:14157239-14195866 Feature type: polypeptide

Protein Sequence

Length: 3,320 (Signal peptide: 1-21)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.767	1.205	1.643	2.285	0.823	1.12	0.857	1.37	1.218	0.757	0.671	1.01	1.063	1.008	1.131	0.96	0.83	0.799	1.228	0.833	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_4136	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.750

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	—	cell_membrane	chloroplast	—	—	—	32-58	0.910	1-21	0.989	1.000	0.000	0.000	0.198	0.136	0.017	0.315	0.169	0.446	0.170	0.031	0.514	0.387

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003446	2.000	1.000	Hsc_gene_23979.t1	Hsc_gene_23979.t1	—	Q04833.1 Low-density lipoprotein receptor-related protein [Caenorhabditis elegans]	KAI1728970.1 low-density lipoprotein receptor domain class A domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005515	GO:0008150_0.963\|GO:0009987_0.894\|GO:0005575_0.853\|GO:0110165_0.828\|GO:0065007_0.792\|GO:0050789_0.769\|GO:0032501_0.699\|GO:0051179_0.692\|GO:0050794_0.691\|GO:0071944_0.685\|GO:0006810_0.684\|GO:0051234_0.684\|GO:0016020_0.673\|GO:0032502_0.654\|GO:0048856_0.654\|GO:0003674_0.637\|GO:0005886_0.631\|GO:0005622_0.628\|GO:0007275_0.620\|GO:0048518_0.598\|GO:0043226_0.564\|GO:0005737_0.559\|GO:0005488_0.536\|GO:0008152_0.527\|GO:0033036_0.522\|GO:0071840_0.516\|GO:0043229_0.512\|GO:0016043_0.510\|GO:0043227_0.510	IPR000033+455-497_502-544_545-585_586-628_606-650_629-671_829-870_878-921_922-964_1548-1590_1568-1610_1591-1633_1611-1654_1612-1652_1634-1678_1655-1698_1656-1695_1679-1721_1699-1743_1723-1766_1925-1968_1971-2021_2022-2064_2065-2105_2243-2289_2265-2309_2290-2333_2310-2353_2311-2351_2334-2376_2383-2425_2577-2623_2624-2672_2642-2689_2642-2692_2673-2715_2693-2718+\|IPR000742+333-369_373-427_711-751_1045-1088_1190-1228_1314-1353_1444-1480_1484-1520_1795-1833_2133-2170_2456-2496_2791-2840_3183-3220_3223-3259+\|IPR001881+330-369_370-400_1441-1480_1481-1520_1796-1833+\|IPR002172+82-118_82-119_83-117_121-162_121-163_122-161_167-208_170-209_176-205_213-250_213-251_213-252_214-246_254-289_254-290_254-291_255-289_293-329_293-330_293-331_294-329_1098-1139_1098-1142_1104-1132_1104-1134_1111-1132_1146-1180_1146-1185_1146-1186_1147-1180_1158-1179_1190-1228_1190-1229_1191-1223_1191-1225_1201-1222_1231-1268_1231-1269_1231-1270_1232-1264_1272-1308_1272-1309_1272-1310_1273-1308_1284-1305_1314-1352_1314-1353_1314-1354_1315-1347_1326-1347_1357-1394_1358-1395_1358-1396_1359-1392_1369-1390_1402-1441_1402-1442_1403-1436_2848-2883_2848-2888_2848-2889_2851-2883_2891-2927_2891-2928_2892-2926_2956-2996_2956-2997_2957-2991_2957-2995_3001-3040_3001-3041_3043-3081_3043-3082_3043-3083_3044-3070_3089-3129_3089-3130_3096-3122_3096-3126_3131-3173_3132-3178_3132-3179_3133-3172_3183-3219_3183-3220_3183-3221_3184-3219_3223-3258_3223-3259_3223-3260_3224-3258_3282-3320_3283-3314+\|IPR009030+1796-2489+\|IPR011042+423-748_749-1090_1527-1835_1836-2169_2170-2492_2493-2834+\|IPR018097+370-393+\|IPR023415+95-117_139-161_267-289_307-329_1286-1308_1371-1394_1417-1440_2863-2887_3196-3219_3236-3258+\|IPR036055+78-118_81-125_120-162_126-162_165-212_173-205_211-248_213-257_249-289_258-291_292-329_292-331_1096-1139_1100-1134_1142-1181_1146-1184_1188-1229_1189-1227_1227-1268_1230-1269_1265-1308_1270-1312_1313-1354_1314-1350_1355-1393_1356-1397_1398-1441_1401-1436_2846-2882_2849-2888_2886-2926_2889-2932_2950-2995_2951-2986_3001-3039_3001-3040_3037-3077_3041-3083_3087-3130_3092-3124_3129-3177_3131-3181_3182-3218_3182-3221_3216-3258_3222-3266_3280-3314_3281-3317+\|IPR051221+175-294+	SM00135+455-497_502-544_545-585_586-628_629-671_829-870_878-921_922-964_1548-1590_1591-1633_1634-1678_1679-1721_1723-1766_1925-1968_1971-2021_2022-2064_2065-2105_2243-2289_2290-2333_2334-2376_2383-2425_2577-2623_2624-2672_2673-2715+\|SM00179+330-369_370-400_1441-1480_1481-1520_1796-1833+\|SM00181+333-369_373-427_711-751_1045-1088_1190-1228_1314-1353_1444-1480_1484-1520_1795-1833_2133-2170_2456-2496_2791-2840_3183-3220_3223-3259+\|SM00192+82-119_121-163_170-209_213-252_254-291_293-331_1098-1139_1146-1186_1190-1229_1231-1270_1272-1310_1314-1354_1358-1396_1402-1442_2848-2889_2891-2928_2956-2997_3001-3041_3043-3083_3089-3130_3132-3179_3183-3221_3223-3260_3282-3320+	PF00057+83-117_213-250_254-289_293-329_1104-1132_1146-1180_1191-1225_1231-1268_1272-1308_1314-1352_1357-1394_2848-2883_2892-2926_2957-2995_3043-3081_3096-3126_3131-3173_3183-3219_3223-3258+Low-density_lipoprotein_receptor_domain_class_A\|PF00058+1612-1652_1656-1695_2311-2351_2642-2689+Low-density_lipoprotein_receptor_repeat_class_B	G3DSA:2.10.25.10:FF:000009+1443-1524+Low-density_lipoprotein_receptor_isoform_1\|G3DSA:2.120.10.30:FF:000241+428-740_1520-1821_2170-2487+Low-density_lipoprotein_receptor-related_protein_6\|G3DSA:4.10.400.10:FF:000001+1188-1229+Low-density_lipoprotein_receptor-related_protein_1\|G3DSA:4.10.400.10:FF:000002+1313-1355_3182-3222+Low-density_lipoprotein_receptor-related_protein_1\|G3DSA:4.10.400.10:FF:000005+1230-1270+low-density_lipoprotein_receptor-related_protein_1B\|G3DSA:4.10.400.10:FF:000011+1357-1396+Low-density_lipoprotein_receptor-related_protein_1\|G3DSA:4.10.400.10:FF:000034+81-119+Low-density_lipoprotein_receptor-related_protein_2\|G3DSA:4.10.400.10:FF:000045+1271-1312+Low-density_lipoprotein_receptor-related_protein_2\|G3DSA:4.10.400.10:FF:000147+291-331+Low-density_lipoprotein_receptor-related_protein_2\|G3DSA:4.10.400.10:FF:000190+212-252+Low-density_lipoprotein_receptor-related_protein\|G3DSA:4.10.400.10:FF:000209+3129-3179+Low-density_lipoprotein_receptor-related_protein\|G3DSA:4.10.400.10:FF:000287+120-166+Low-density_lipoprotein_receptor-related_protein	PTHR22722+175-294+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-3320	8yw2_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.500	369546.990	4.953	-87.500	26.687	10.994	48.012	51.988	12.711	13.976	56.928

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	greenyellow	3419.229	2734.702	4817.989	1761.220	2364.649	4037.223	2245.023	3843.694	506.242	6402.759	3875.681

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.590	-0.772	-1.345	0.393	0.788	-0.839	—	-0.633	-3.779	—	—	—	—

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