Hg_chrom3_TN10mRNA_4486
Organism: Heterodera glycines Gene Locus: chr3:204064-216202 Feature type: polypeptideProtein Sequence
Length: 1,906
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.885 | 0.952 | 0.973 | 0.615 | 1.084 | 1.278 | 0.543 | 1.364 | 1.516 | 1.468 | 0.668 | 1.327 | 1.312 | 0.837 | 1.413 | 0.877 | 0.912 | 0.962 | 0.848 | 0.849 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4251
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,RKNPLMYGVEWRELRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.696
|
0.266
|
0.016
|
0.444
|
0.078
|
0.102
|
0.046
|
0.008
|
0.081
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007339
|
1.000
|
1.000
|
Hsc_gene_16520.t1
|
Hsc_gene_16520.t1
|
— |
E1BNG3.1 Activating signal cointegrator 1 complex subunit 3 [Bos taurus]
|
KAI1730785.1 sec63 brl domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0005524|GO:0016887
|
GO:0008150_0.790|GO:0005575_0.779|GO:0110165_0.774|GO:0009987_0.729|GO:0005622_0.703|GO:0008152_0.601|GO:0044238_0.577|GO:0003674_0.573|GO:0016020_0.570|GO:0043226_0.557|GO:0043170_0.541|GO:0043229_0.537|GO:0044237_0.511|GO:0071840_0.509|GO:0016043_0.505|GO:0009058_0.503
|
IPR001650+426-641_488-580_491-579_1276-1473_1340-1428_1347-1427+|IPR003593+181-401_1070-1248+|IPR004179+701-1016_702-1014_1547-1897_1547-1899+|IPR011545+170-347_1057-1225+|IPR014001+163-376_176-360_1052-1255_1065-1243+|IPR014756+1802-1899+|IPR027417+157-368_162-359_363-608_369-602_946-1236_1020-1250_1245-1456_1251-1457+|IPR035892+908-1016_1793-1906+|IPR036388+610-700_1458-1553+|IPR036390+608-713_1456-1559+|IPR050474+63-925+
|
SM00382+181-401_1070-1248+|SM00487+163-376_1052-1255+|SM00490+488-580_1340-1428+|SM00973+701-1016_1547-1899+
|
PF00270+170-347_1057-1225+DEAD/DEAH_box_helicase|PF00271+491-579_1347-1427+Helicase_conserved_C-terminal_domain|PF02889+702-1014_1547-1897+Sec63_Brl_domain
|
G3DSA:1.10.10.10:FF:000012+1458-1554+U5_small_nuclear_ribonucleoprotein_helicase|G3DSA:1.10.10.10:FF:000024+610-701+U5_small_nuclear_ribonucleoprotein_helicase|G3DSA:1.10.3380.10:FF:000001+702-849+U5_small_nuclear_ribonucleoprotein_helicase|G3DSA:1.10.3380.10:FF:000002+1554-1689+Activating_signal_cointegrator_1_complex_subunit_3|G3DSA:3.40.50.300:FF:000062+402-603+U5_small_nuclear_ribonucleoprotein_helicase|G3DSA:3.40.50.300:FF:000102+155-368+RNA_helicase,_activating_signal_cointegrator_1|G3DSA:3.40.50.300:FF:000231+1251-1457+Activating_signal_cointegrator_1_complex_subunit_3|G3DSA:3.40.50.300:FF:000254+1020-1250+U5_small_nuclear_ribonucleoprotein_helicase
|
PTHR47961+63-925+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-49
|
1.000
|
50-1906
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
216999.330
|
7.056
|
16.000
|
25.918
|
11.438
|
46.695
|
53.305
|
14.061
|
11.857
|
45.803
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
1761.451
|
1357.449
|
924.881
|
1007.533
|
1247.708
|
1209.864
|
1690.793
|
888.210
|
673.745
|
4078.625
|
2619.391
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.784
|
-0.567
|
0.233
|
0.277
|
— |
0.492
|
-0.552
|
1.071
|
-2.728
|
— | — | — | — |
No JSON data available for plots.