Hg_chrom3_TN10mRNA_4500
Organism: Heterodera glycines Gene Locus: chr3:274098-275606 Feature type: polypeptideProtein Sequence
Length: 86
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.082 | 1.893 | 0.423 | 2.406 | 0.388 | 0.894 | 0.831 | 1.744 | 0.258 | 1.1 | 1.586 | 0.684 | 1.938 | 1.118 | 0.475 | 0.664 | 0.572 | 1.233 | 2.683 | 0.342 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4265
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_16533;Hsc_gene_23496
|
Hg_chrom3_TN10mRNA_4500
|
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-32
|
0.986
|
1.000
|
0.000
|
0.000
|
0.443
|
0.273
|
0.262
|
0.184
|
0.221
|
0.144
|
0.107
|
0.055
|
0.175
|
0.907
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003463
|
2.000
|
1.000
|
Hsc_gene_16565.t1
|
— | — |
P0CY85.1 Kunitz-type conkunitzin-B1 [Conus bullatus]
|
P0CY85.1 Kunitz-type conkunitzin-B1 [Conus bullatus]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.801|GO:0005575_0.705|GO:0110165_0.703|GO:0003674_0.677|GO:0065007_0.584|GO:0005488_0.533|GO:0005515_0.526|GO:0005576_0.501
|
IPR002223+34-85_35-85_36-84+|IPR036880+31-85_34-85+
|
SM00131+34-85+
|
PF00014+35-85+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR47247+17-84+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-86
|
2m01_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
9569.160
|
9.470
|
8.500
|
20.930
|
15.116
|
40.698
|
59.302
|
16.279
|
4.651
|
55.814
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
1519.127
|
80.054
|
76.209
|
94.912
|
121.391
|
536.082
|
15451.004
|
313.307
|
147.150
|
283.460
|
225.042
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.426
|
0.323
|
2.152
|
4.865
|
— |
5.771
|
— | — | — | — | — |