SCN Proteipedia

Hg_chrom3_TN10mRNA_5620

Organism: Heterodera glycines Gene Locus: chr3:6960090-6961246 Feature type: polypeptide

Protein Sequence

Length: 156

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.596	0.447	0.117	0.442	0.427	1.808	0.916	1.603	0.285	1.646	0.583	0.754	2.315	0.986	0.785	1.923	0.841	1.457	1.479	1.32	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5338	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	endoplasmic_reticulum	—	—	—	—	—	—	—	—	0.000	—	—	0.228	0.081	0.015	0.115	0.610	0.575	0.603	0.018	0.252	0.033

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007748	1.000	1.000	Hsc_gene_5776.t1	Hsc_gene_5776.t1	—	Q6P0F0.1 ER membrane protein complex subunit 6 [Danio rerio]	KAH7700662.1 transmembrane protein 93 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005783\|GO:0016020\|GO:0072546	GO:0008150_0.944\|GO:0005575_0.941\|GO:0110165_0.941\|GO:0016020_0.915\|GO:0071944_0.913\|GO:0005886_0.909\|GO:0009987_0.899\|GO:0051179_0.863\|GO:0051234_0.861\|GO:0005622_0.827\|GO:0005737_0.827\|GO:0005773_0.827\|GO:0043226_0.827\|GO:0043227_0.827\|GO:0043229_0.827\|GO:0043231_0.827\|GO:0003674_0.801\|GO:0012505_0.790\|GO:0031090_0.744\|GO:0008152_0.720\|GO:0044237_0.715\|GO:0051641_0.714\|GO:0071840_0.713\|GO:0016043_0.712\|GO:0061024_0.699\|GO:0008104_0.694\|GO:0033036_0.694\|GO:0045184_0.694\|GO:0070727_0.694\|GO:0005783_0.692\|GO:0006996_0.689\|GO:0010256_0.684\|GO:0009056_0.682\|GO:0051668_0.681\|GO:0022607_0.680\|GO:0044085_0.680\|GO:0044248_0.680\|GO:0072657_0.679\|GO:0006914_0.677\|GO:0061919_0.677\|GO:0007033_0.675\|GO:0090150_0.675\|GO:0033365_0.674\|GO:0016236_0.673\|GO:0000045_0.670\|GO:0003824_0.670\|GO:0007029_0.670\|GO:0008641_0.670\|GO:0016462_0.670\|GO:0016740_0.670\|GO:0016746_0.670\|GO:0016755_0.670\|GO:0016787_0.670\|GO:0016817_0.670\|GO:0016818_0.670\|GO:0016874_0.670\|GO:0016877_0.670\|GO:0016887_0.670\|GO:0017111_0.670\|GO:0019777_0.670\|GO:0019778_0.670\|GO:0019786_0.670\|GO:0019787_0.670\|GO:0045048_0.670\|GO:0045050_0.670\|GO:0051205_0.670\|GO:0061650_0.670\|GO:0061651_0.670\|GO:0061659_0.670\|GO:0061660_0.670\|GO:0070925_0.670\|GO:0071816_0.670\|GO:0140096_0.670\|GO:0140657_0.670\|GO:1905037_0.670\|GO:0098588_0.648\|GO:0031984_0.628\|GO:0005789_0.627\|GO:0042175_0.627\|GO:0098827_0.627\|GO:0032991_0.624\|GO:0098796_0.624\|GO:0140534_0.553\|GO:0072546_0.540\|GO:1903349_0.540\|GO:1990462_0.540	IPR008504+57-156+\|IPR029008+72-150+	—	PF07019+72-150+EMC6	—	PTHR20994+57-156+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-26	1.000	27-156	9c7v_6	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.911	17407.030	10.022	9.500	14.103	17.949	41.667	58.333	10.897	3.205	50.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	lightcyan	697.768	225.310	499.658	584.413	704.947	619.591	643.323	455.296	392.333	1358.781	944.589

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.920	1.238	0.335	0.238	-0.171	—	-0.548	0.642	—	—	—	—	—

No JSON data available for plots.

Back to Browser