Hg_chrom3_TN10mRNA_6221
Organism: Heterodera glycines Gene Locus: chr3:9337622-9341486 Feature type: polypeptideProtein Sequence
Length: 460
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.708 | 1.213 | 0.988 | 0.675 | 1.232 | 1.338 | 0.725 | 1.957 | 1.063 | 1.028 | 0.922 | 1.918 | 1.751 | 0.711 | 0.843 | 1.025 | 0.784 | 0.922 | 1.171 | 0.959 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5899
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6221
|
16-Not_Clustered
|
0.928
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-21
|
0.974
|
0.978
|
0.000
|
0.000
|
0.109
|
0.228
|
0.057
|
0.298
|
0.348
|
0.341
|
0.293
|
0.016
|
0.184
|
0.748
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008093
|
1.000
|
1.000
|
Hsc_gene_15489.t1
|
Hsc_gene_15489.t1
|
— |
Q9R0J8.1 Legumain [Rattus norvegicus]
|
AVA09646.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008233
|
GO:0005575_0.837|GO:0110165_0.828|GO:0003674_0.821|GO:0005622_0.706|GO:0016020_0.706|GO:0008150_0.705|GO:0003824_0.686|GO:0043226_0.653|GO:0009987_0.641|GO:0043229_0.639|GO:0005737_0.635|GO:0016787_0.635|GO:0140096_0.629|GO:0043227_0.620|GO:0008233_0.610|GO:0043231_0.610|GO:0004175_0.600|GO:0004197_0.524|GO:0008234_0.524|GO:0071944_0.512|GO:0005773_0.509
|
IPR001096+8-459_47-451_58-82_58-314_83-112_130-145_156-175_204-220+|IPR046427+335-456+|IPR048501+337-451_357-451+
|
— |
PF01650+58-314+Peptidase_C13_family|PF20985+357-451+Legumain,_prodomain
|
G3DSA:3.40.50.1460:FF:000006+52-331+Legumain
|
PTHR12000+47-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-460
|
4noj_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.508
|
52601.490
|
6.228
|
-3.000
|
26.957
|
15.000
|
49.348
|
50.652
|
14.130
|
12.826
|
46.522
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
3122.509
|
2189.179
|
3846.961
|
1481.290
|
3728.093
|
4275.958
|
6176.756
|
8229.511
|
1534.109
|
1287.491
|
1393.184
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
-0.701
|
-1.269
|
1.300
|
0.213
|
0.541
|
0.841
|
-0.272
|
— | — |
2.489
|
— | — |