SCN Proteipedia

Hg_chrom3_TN10mRNA_6235

Organism: Heterodera glycines Gene Locus: chr3:9398680-9401444 Feature type: polypeptide

Protein Sequence

Length: 323

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.936	0.864	0.619	0.214	1.187	2.62	0.479	1.393	0.826	0.795	1.079	1.639	0.602	1.072	1.453	1.371	0.914	1.126	0.714	0.637	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5913	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.646

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRP	—	—	—	—	—	—	0.000	—	—	0.938	0.110	0.020	0.174	0.023	0.062	0.059	0.001	0.026	0.064

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008098	1.000	1.000	Hsc_gene_15483.t1	Hsc_gene_15483.t1	—	Q03123.1 General transcription factor IIF subunit 2 [Xenopus laevis]	KAH7730399.1 Protein Y39B6A.36 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0005674\|GO:0006366\|GO:0006367	GO:0008150_0.943\|GO:0005575_0.921\|GO:0110165_0.918\|GO:0009987_0.908\|GO:0005622_0.896\|GO:0043226_0.851\|GO:0016020_0.849\|GO:0043229_0.841\|GO:0008152_0.806\|GO:0043170_0.806\|GO:0009058_0.803\|GO:0009059_0.803\|GO:0010467_0.803\|GO:0044237_0.803\|GO:0044249_0.803\|GO:0006139_0.797\|GO:0044238_0.797\|GO:0034654_0.791\|GO:0090304_0.786\|GO:0043227_0.785\|GO:0141187_0.781\|GO:0016070_0.777\|GO:0032774_0.774\|GO:0043231_0.771\|GO:0006351_0.750\|GO:0005634_0.739\|GO:0006366_0.724\|GO:0006352_0.685\|GO:0006367_0.684\|GO:0032991_0.657\|GO:0003674_0.649\|GO:0006354_0.596\|GO:0006368_0.596\|GO:0031974_0.585\|GO:0031981_0.585\|GO:0043233_0.585\|GO:0070013_0.585\|GO:0005654_0.551\|GO:0140513_0.531\|GO:1902494_0.515\|GO:0005667_0.507\|GO:0140535_0.501	IPR003196+28-303+\|IPR011039+30-181+\|IPR036388+237-305+\|IPR036390+238-304+\|IPR040450+238-302+\|IPR040504+37-185+	—	PF02270+238-302+TFIIF,_beta_subunit_HTH_domain\|PF17683+37-185+TFIIF,_beta_subunit_N-terminus	G3DSA:1.10.10.10:FF:000035+237-305+General_transcription_factor_IIF_subunit_2	PTHR10445+28-303+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-159;298-323	1.000	160-297	2bby_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.837	36488.170	10.232	16.500	27.554	8.050	56.656	43.344	17.028	10.526	47.988

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	brown	514.550	516.589	512.937	550.071	868.463	720.733	1532.719	528.262	326.979	44.759	165.710

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.240	—	0.210	0.627	-0.255	1.099	-0.552	1.679	—	—	4.380	—	—

No JSON data available for plots.

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