SCN Proteipedia

Hg_chrom3_TN10mRNA_6693

Organism: Heterodera glycines Gene Locus: chr3:12326650-12330451 Feature type: polypeptide

Protein Sequence

Length: 400

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.64	1.628	0.455	0.776	2.625	2.051	0.714	2.375	1.0	0.946	1.212	1.912	0.903	0.385	1.173	0.393	0.984	0.417	0.577	0.662	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6339	—	—	1.222	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Migratory	0.976

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRK	—	—	—	—	—	—	0.006	—	—	0.896	0.093	0.010	0.332	0.015	0.007	0.018	0.004	0.071	0.054

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001238	2.000	3.000	Hsc_gene_14721.t1;Hsc_gene_5308.t1;Hsc_gene_5308.t2	—	—	A6QLU5.1 Zinc finger protein 184 [Bos taurus]	XP_066209622.1 zinc finger protein 184 isoform X1 [Saccopteryx leptura]	No	-0.350

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.946\|GO:0009987_0.915\|GO:0065007_0.907\|GO:0050789_0.904\|GO:0003674_0.897\|GO:0005575_0.897\|GO:0005488_0.896\|GO:0005622_0.892\|GO:0110165_0.892\|GO:0050794_0.887\|GO:0043226_0.871\|GO:0008152_0.851\|GO:0009058_0.851\|GO:0019222_0.851\|GO:0043229_0.846\|GO:0009059_0.841\|GO:0010467_0.841\|GO:0043170_0.841\|GO:0044237_0.841\|GO:0044249_0.841\|GO:0031323_0.839\|GO:0044238_0.839\|GO:0097159_0.835\|GO:0060255_0.834\|GO:0080090_0.831\|GO:0006139_0.830\|GO:0034654_0.828\|GO:0016020_0.825\|GO:0016070_0.825\|GO:0090304_0.825\|GO:0009889_0.822\|GO:0031326_0.822\|GO:0032502_0.819\|GO:0010556_0.817\|GO:0010468_0.816\|GO:0032774_0.816\|GO:0141187_0.816\|GO:0003676_0.811\|GO:0043227_0.807\|GO:0019219_0.788\|GO:0006351_0.785\|GO:0051252_0.780\|GO:2001141_0.780\|GO:0006355_0.777\|GO:0005634_0.775\|GO:0043231_0.775\|GO:0003677_0.754\|GO:0043565_0.737\|GO:0003690_0.736\|GO:1990837_0.730\|GO:0140110_0.710\|GO:0001067_0.708\|GO:0000976_0.702\|GO:0022414_0.698\|GO:0003006_0.693\|GO:0019953_0.689\|GO:0003700_0.688\|GO:0007276_0.686\|GO:0048609_0.686\|GO:0048232_0.683\|GO:0007283_0.681	IPR013087+251-273_251-278_253-273_279-301_279-306_281-301_325-347_325-352_327-347_353-375_353-380_355-375+\|IPR036236+259-308_310-362+\|IPR050752+230-379+	SM00355+251-273_279-301_325-347_353-375+	PF00096+325-347_353-375+Zinc_finger,_C2H2_type\|PF13465+266-290+Zinc-finger_double_domain	G3DSA:3.30.160.60:FF:000045+250-275+ZFP69_zinc_finger_protein_B\|G3DSA:3.30.160.60:FF:000624+348-375+zinc_finger_protein_697\|G3DSA:3.30.160.60:FF:001480+319-347+Si:cabz01071911.3\|G3DSA:3.30.160.60:FF:003287+277-307+Zgc:113343	PTHR24384+230-379+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-237	1.000	238-400	2i13_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.766	46862.190	5.709	-8.500	36.750	11.000	60.500	39.500	18.500	18.250	36.750

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	368.417	76.617	263.524	162.885	114.247	144.198	90.785	200.042	524.245	824.030	695.551

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.553	0.952	-0.585	-0.544	0.351	-0.659	0.367	-0.999	—	—	—	—	—

No JSON data available for plots.

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