Hg_chrom4_TN10mRNA_8131
Organism: Heterodera glycines Gene Locus: chr4:6466914-6472211 Feature type: polypeptideProtein Sequence
Length: 1,189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.636 | 1.271 | 0.826 | 0.696 | 1.43 | 1.143 | 0.721 | 1.304 | 0.822 | 1.273 | 0.968 | 0.989 | 1.542 | 0.97 | 1.459 | 1.394 | 0.689 | 0.828 | 0.841 | 0.396 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7644
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RKKR,RRRR,PRRK,RKAIQLKHVWPNYKLRFR,RKQFRSSERATKIKRTKKM
|
— | — |
33-61
|
0.929
|
— | — |
0.000
|
— | — |
0.318
|
0.150
|
0.057
|
0.402
|
0.635
|
0.216
|
0.284
|
0.036
|
0.351
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008749
|
1.000
|
1.000
|
Hsc_gene_24343.t1
|
Hsc_gene_24343.t1
|
— | — |
KAI1725215.1 PDZ domain-containing protein 8 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0008289|GO:0044233|GO:0051560|GO:1990456
|
GO:0008150_0.964|GO:0005575_0.949|GO:0110165_0.949|GO:0009987_0.926|GO:0016020_0.901|GO:0071944_0.850|GO:0005886_0.847|GO:0005622_0.846|GO:0043226_0.824|GO:0043229_0.802|GO:0051179_0.796|GO:0071840_0.785|GO:0016043_0.784|GO:0043227_0.769|GO:0043231_0.737|GO:0005737_0.724|GO:0042592_0.693|GO:0048878_0.680|GO:0005773_0.679|GO:0019725_0.679|GO:0051640_0.677|GO:0055082_0.677|GO:0006873_0.674|GO:0050801_0.674|GO:0055080_0.674|GO:0098771_0.674|GO:0030003_0.673|GO:0005739_0.670|GO:0006874_0.670|GO:0012505_0.670|GO:0022406_0.670|GO:0051560_0.670|GO:0055074_0.670|GO:0140056_0.670|GO:1990456_0.670|GO:0031090_0.589|GO:0005783_0.580|GO:0031984_0.559|GO:0065007_0.559|GO:0005789_0.549|GO:0042175_0.549|GO:0098827_0.549|GO:0050789_0.546|GO:0044232_0.540|GO:0044233_0.540
|
IPR001478+345-428_350-424_355-428+|IPR002219+889-940_890-940+|IPR031468+65-262+|IPR036034+325-444_348-427+|IPR039275+1-1183+|IPR041489+375-424+|IPR046349+878-936+
|
SM00109+890-940+|SM00228+355-428+
|
PF17820+375-424+PDZ_domain
|
— |
PTHR21519+1-1183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
411-739;947-994;1185-1189
|
3.000
|
1-410;740-946;995-1184
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
134530.900
|
7.938
|
20.500
|
29.268
|
10.597
|
53.154
|
46.846
|
16.148
|
13.120
|
48.024
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1722.612
|
2716.855
|
2328.968
|
1758.774
|
1669.357
|
1691.221
|
2439.511
|
1851.956
|
2046.264
|
580.490
|
1208.679
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.451
|
-0.764
|
-0.297
|
-0.107
|
— |
0.539
|
— |
0.540
|
— | — | — | — | — |
No JSON data available for plots.