SCN Proteipedia

Hg_chrom4_TN10mRNA_8198

Organism: Heterodera glycines Gene Locus: chr4:6760645-6762582 Feature type: polypeptide

Protein Sequence

Length: 350

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.963	1.262	0.935	0.493	1.048	2.271	0.374	1.429	0.952	1.158	1.039	1.849	0.873	0.989	1.108	1.184	0.656	0.866	0.22	1.092	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7706	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRIR,RRKRR	—	—	—	—	—	—	0.000	—	—	0.847	0.148	0.008	0.352	0.036	0.048	0.064	0.004	0.059	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008793	1.000	1.000	Hsc_gene_17572.t1	Hsc_gene_17572.t1	—	P41779.1 Homeobox protein ceh-20 [Caenorhabditis elegans]	KAH7731123.1 Homeobox protein ceh-20 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0003700\|GO:0005634\|GO:0006355	GO:0008150_0.932\|GO:0065007_0.852\|GO:0050789_0.848\|GO:0009987_0.844\|GO:0050794_0.835\|GO:0005575_0.819\|GO:0110165_0.810\|GO:0005622_0.796\|GO:0008152_0.786\|GO:0019222_0.786\|GO:0031323_0.784\|GO:0044237_0.784\|GO:0043170_0.777\|GO:0060255_0.777\|GO:0044238_0.776\|GO:0080090_0.776\|GO:0003674_0.774\|GO:0005488_0.774\|GO:0009058_0.770\|GO:0009059_0.770\|GO:0010467_0.770\|GO:0044249_0.770\|GO:0009889_0.767\|GO:0043226_0.767\|GO:0031326_0.766\|GO:0006139_0.761\|GO:0034654_0.761\|GO:0090304_0.761\|GO:0141187_0.761\|GO:0043229_0.760\|GO:0010556_0.757\|GO:0016070_0.754\|GO:0032774_0.754\|GO:0010468_0.749\|GO:0019219_0.748\|GO:0051252_0.747\|GO:0006351_0.739\|GO:0006355_0.734\|GO:2001141_0.734\|GO:0016020_0.692\|GO:0003676_0.680\|GO:0097159_0.680\|GO:0048518_0.666\|GO:0048522_0.660\|GO:0043227_0.649\|GO:0009893_0.644\|GO:0031325_0.641\|GO:0010604_0.637\|GO:0043231_0.637\|GO:0009891_0.636\|GO:0031328_0.636\|GO:0003677_0.634\|GO:0043565_0.634\|GO:0010557_0.625\|GO:0032502_0.612\|GO:0048856_0.612\|GO:0045935_0.611\|GO:0032501_0.606\|GO:0005634_0.604\|GO:0051254_0.602\|GO:1902680_0.594\|GO:0045893_0.589\|GO:0007275_0.583\|GO:0006366_0.552\|GO:0006357_0.541\|GO:0003690_0.523\|GO:1990837_0.523	IPR001356+195-258_197-262_198-258+\|IPR005542+11-196_17-196+\|IPR008422+216-254+\|IPR009057+197-267+\|IPR017970+233-256+\|IPR050224+102-271+	SM00389+197-262+	PF03792+17-196+PBC_domain\|PF05920+216-254+Homeobox_KN_domain	G3DSA:1.10.10.60:FF:000008+197-277+Pre-B-cell_leukemia_transcription_factor_1	PTHR11850+102-271+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	334-350	1.000	1-333	5zjt_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.740	39823.100	8.320	8.000	26.571	10.000	53.143	46.857	15.143	11.429	46.571

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	1820.997	3673.832	1816.064	1692.620	1578.019	1822.679	2271.924	3096.942	1950.472	521.980	1134.191

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.245	-1.255	—	-0.133	0.223	0.328	0.661	-0.305	—	—	—	—	—

No JSON data available for plots.

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