SCN Proteipedia

Hg_chrom4_TN10mRNA_8231

Organism: Heterodera glycines Gene Locus: chr4:6890103-6906041 Feature type: polypeptide

Protein Sequence

Length: 2,577

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.812	1.281	0.755	0.723	0.867	1.174	0.591	1.397	1.595	1.542	0.729	1.415	1.25	0.761	1.117	1.436	0.782	0.8	0.866	0.81	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7737	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.231	0.132	0.042	0.321	0.480	0.535	0.462	0.050	0.564	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002107	2.000	2.000	Hsc_gene_17607.t1;Hsc_gene_17607.t2	Hsc_gene_17604.t1;Hsc_gene_17607.t1;Hsc_gene_17607.t2	—	E9Q3L2.2 Phosphatidylinositol 4-kinase alpha [Mus musculus]	KAI1713438.1 phosphatidylinositol 3- and 4-kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016301\|GO:0046854	GO:0008150_0.901\|GO:0009987_0.873\|GO:0005575_0.782\|GO:0110165_0.782\|GO:0003674_0.737\|GO:0016020_0.733\|GO:0071944_0.698\|GO:0005886_0.682\|GO:0005622_0.582\|GO:0008152_0.543\|GO:0003824_0.534\|GO:0044238_0.527\|GO:0044237_0.520	IPR000403+1915-2178_1938-2142_1938-2191+\|IPR001263+1577-1753_1578-1770_1614-1760+\|IPR011009+1767-2184+\|IPR012446+2370-2525+\|IPR015433+282-2180+\|IPR016024+1574-1750+\|IPR018936+1941-1955_2034-2054+\|IPR036940+2000-2191+\|IPR038350+2361-2561+\|IPR042236+1569-1750+\|IPR045495+537-775_778-1167_1194-1545+	SM00145+1578-1770+\|SM00146+1938-2191+	PF00454+1938-2142+Phosphatidylinositol_3-_and_4-kinase\|PF00613+1614-1760+Phosphoinositide_3-kinase_family,_accessory_domain_(PIK_domain)\|PF07856+2370-2525+Mediator_of_CRAC_channel_activity\|PF19274+537-775_778-1167_1194-1545+PI4-kinase_N-terminal_region	G3DSA:1.10.1070.11:FF:000005+2001-2188+Phosphatidylinositol_4-kinase,_catalytic,_alpha\|G3DSA:1.20.140.140:FF:000003+2363-2554+Protein_orai\|G3DSA:1.25.40.70:FF:000011+1595-1763+Phosphatidylinositol_4-kinase_alpha\|G3DSA:3.30.1010.10:FF:000009+1766-1886+Phosphatidylinositol_4-kinase,_catalytic,_alpha	PTHR10048+282-2180+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	2210-2365	2.000	1-2209;2366-2577	4hkr_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.812	289185.220	8.352	60.000	22.429	11.176	47.342	52.658	13.077	9.352	47.769

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	5120.597	10520.695	5472.285	4466.162	4037.297	4976.700	4554.589	5324.601	3218.908	5231.305	4368.849

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.173	-1.373	-0.184	-0.177	0.316	—	—	—	—	—	—	—	—

No JSON data available for plots.

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