SCN Proteipedia

Hg_chrom4_TN10mRNA_8479

Organism: Heterodera glycines Gene Locus: chr4:7949691-7957754 Feature type: polypeptide

Protein Sequence

Length: 1,263

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.068	1.123	0.821	0.546	0.937	1.624	0.943	1.346	0.721	0.813	0.732	1.211	0.99	1.203	1.454	1.436	0.999	0.9	0.365	0.489	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7964	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKRK,KRKR,RKRR,RRRR,RKGRPKSAIVAAGDKRGQK	—	—	—	—	—	—	0.000	—	—	0.269	0.121	0.037	0.676	0.105	0.189	0.115	0.029	0.530	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002126	2.000	2.000	Hsc_gene_14682.t1;Hsc_gene_14682.t2	Hsc_gene_14682.t1;Hsc_gene_14682.t2	—	F1LYQ8.2 FERM, ARHGEF and pleckstrin domain-containing protein 1 [Rattus norvegicus]	KAI1716388.1 FERM adjacent (FA) domain-containing protein [Ditylenchus destructor]	No	-0.570

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005856	GO:0005575_0.906\|GO:0110165_0.906\|GO:0008150_0.758\|GO:0005622_0.738\|GO:0016020_0.703\|GO:0009987_0.693\|GO:0065007_0.644\|GO:0003674_0.631\|GO:0050789_0.607\|GO:0071944_0.559\|GO:0005488_0.549\|GO:0005886_0.544\|GO:0050794_0.544\|GO:0043226_0.519\|GO:0005737_0.513	IPR000299+31-317+\|IPR011993+222-317+\|IPR014352+111-221+\|IPR014847+347-391_348-383+\|IPR018979+35-96+\|IPR018980+231-321_232-318+\|IPR019747+85-115+\|IPR019748+115-227_124-219+\|IPR019749+27-227_64-76_144-164_207-223+\|IPR029071+28-114+\|IPR035963+115-222+\|IPR041788+214-338+\|IPR051835+13-318+	SM00295+27-227+\|SM01195+347-391+\|SM01196+231-321+	PF00373+115-227+FERM_central_domain\|PF08736+348-383+FERM_adjacent_(FA)\|PF09379+35-96+FERM_N-terminal_domain\|PF09380+232-318+FERM_C-terminal_PH-like_domain	G3DSA:1.20.80.10:FF:000005+111-219+FERM,_RhoGEF_and_pleckstrin_domain-containing_protein_1\|G3DSA:2.30.29.30:FF:000002+222-316+Band_4.1-like_protein_5_isoform_1\|G3DSA:3.10.20.90:FF:000040+25-110+FERM,_RhoGEF_and_pleckstrin_domain-containing_protein	PTHR45858+13-318+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	319-1263	1.000	1-318	6d21_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.932	137276.220	9.300	40.000	24.782	8.393	52.098	47.902	14.648	10.135	56.374

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	948.375	5667.294	1325.647	747.287	265.094	229.682	419.382	570.891	185.904	550.235	394.093

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.325	-3.060	-0.719	-1.528	—	0.878	1.216	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser