Hg_chrom4_TN10mRNA_8871
Organism: Heterodera glycines Gene Locus: chr4:12538653-12542360 Feature type: polypeptideProtein Sequence
Length: 300
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.202 | 1.008 | 1.03 | 0.575 | 0.667 | 1.453 | 0.476 | 1.167 | 0.741 | 1.351 | 0.606 | 2.745 | 1.481 | 0.962 | 1.361 | 0.857 | 0.874 | 0.909 | 1.538 | 1.078 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8336
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.694
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
1-35
|
0.998
|
— | — |
0.000
|
— | — |
0.073
|
0.930
|
0.028
|
0.148
|
0.022
|
0.070
|
0.087
|
0.006
|
0.033
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003970
|
2.000
|
1.000
|
Hsc_gene_4659.t1
|
Hsc_gene_4625.t1;Hsc_gene_4659.t1;Hsc_gene_4690.t1
|
— | — |
XP_024509740.1 Ubiquinol-cytochrome-c reductase complex assembly factor 1 [Strongyloides ratti];CEF70543.1 Ubiquinol-cytochrome-c reductase complex assembly factor 1 [Strongyloides ratti]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.882|GO:0110165_0.874|GO:0005622_0.802|GO:0016020_0.782|GO:0005737_0.753|GO:0008150_0.732|GO:0043226_0.731|GO:0043229_0.721|GO:0043227_0.690|GO:0043231_0.678|GO:0009987_0.670|GO:0005739_0.557|GO:0071840_0.525|GO:0016043_0.520
|
IPR007129+86-253+|IPR021150+110-252+
|
— |
PF03981+110-252+Ubiquinol-cytochrome_C_chaperone
|
— |
PTHR12184+86-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
271-300
|
1.000
|
1-270
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
34267.400
|
8.327
|
6.500
|
22.667
|
13.333
|
44.000
|
56.000
|
13.000
|
9.667
|
48.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
811.614
|
410.416
|
488.431
|
643.159
|
811.568
|
693.160
|
811.124
|
479.812
|
263.799
|
1726.334
|
1099.534
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.511
|
0.506
|
0.304
|
-0.213
|
0.237
|
-0.635
|
0.900
|
-2.811
|
— | — | — | — |
No JSON data available for plots.