SCN Proteipedia

Hg_chrom5_TN10mRNA_10548

Organism: Heterodera glycines Gene Locus: chr5:8214566-8218180 Feature type: polypeptide

Protein Sequence

Length: 346

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.983	1.008	0.368	0.797	0.482	1.186	1.307	2.457	0.514	0.82	0.569	2.38	1.285	0.723	1.062	1.239	0.758	0.438	1.112	1.02	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9929	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	RKSK,RRWCPTIAGGPCRRYRH	—	—	8-45	0.850	—	—	0.000	—	—	0.752	0.123	0.005	0.326	0.078	0.062	0.174	0.076	0.062	0.133

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009954	1.000	1.000	Hsc_gene_14260.t1	Hsc_gene_14260.t1	—	Q29RS8.1 Friend leukemia integration 1 transcription factor [Bos taurus]	KAI1721939.1 ets-domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0006355\|GO:0006357\|GO:0043565	GO:0008150_0.920\|GO:0009987_0.802\|GO:0005575_0.725\|GO:0110165_0.720\|GO:0003674_0.719\|GO:0065007_0.710\|GO:0050789_0.694\|GO:0050794_0.692\|GO:0008152_0.678\|GO:0009058_0.664\|GO:0044237_0.654\|GO:0005488_0.648\|GO:0044238_0.631\|GO:0044249_0.627\|GO:0009059_0.621\|GO:0010467_0.621\|GO:0043170_0.621\|GO:0019222_0.620\|GO:0031323_0.620\|GO:0097159_0.617\|GO:0005622_0.610\|GO:0016020_0.603\|GO:0060255_0.601\|GO:0009889_0.600\|GO:0031326_0.600\|GO:0032502_0.598\|GO:0048856_0.598\|GO:0010556_0.596\|GO:0010468_0.593\|GO:0003676_0.592\|GO:0080090_0.588\|GO:0043226_0.586\|GO:0006139_0.584\|GO:0043229_0.575\|GO:0034654_0.567\|GO:0048518_0.563\|GO:0016070_0.562\|GO:0090304_0.562\|GO:0032774_0.560\|GO:0141187_0.560\|GO:0019219_0.555\|GO:0048522_0.555\|GO:0051252_0.555\|GO:0006351_0.541\|GO:0006355_0.541\|GO:2001141_0.541\|GO:0003677_0.526\|GO:0032501_0.526\|GO:0009893_0.512\|GO:0009891_0.509\|GO:0043565_0.509\|GO:0031325_0.508\|GO:0010604_0.507\|GO:0031328_0.506\|GO:0043227_0.503\|GO:0010557_0.502	IPR000418+65-150_66-79_66-146_67-145_68-76_90-108_109-127_112-127_128-146+\|IPR036388+36-169+\|IPR036390+63-176+\|IPR046328+45-150+	SM00413+65-150+	PF00178+67-145+Ets-domain	G3DSA:1.10.10.10:FF:000039+34-157+Friend_leukemia_integration_1_transcription_factor	PTHR11849+45-150+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-346	9mxa_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.917	36718.400	9.818	22.500	18.786	14.451	41.040	58.960	13.873	4.913	56.647

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	139.204	292.244	515.848	177.931	46.639	28.332	21.193	141.986	27.251	129.512	85.686

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.592	-0.853	-1.427	-1.960	-0.707	—	2.227	-2.603	—	—	—	—	—

No JSON data available for plots.

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