Hg_chrom5_TN10mRNA_10568
Organism: Heterodera glycines Gene Locus: chr5:8413635-8431420 Feature type: polypeptideProtein Sequence
Length: 1,658
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 0.954 | 0.888 | 2.787 | 1.277 | 1.098 | 1.156 | 0.935 | 0.456 | 0.685 | 0.786 | 0.639 | 0.972 | 1.45 | 0.948 | 0.862 | 0.959 | 0.74 | 1.253 | 0.976 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9947
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-35
|
0.932
|
0.999
|
0.000
|
0.000
|
0.241
|
0.099
|
0.012
|
0.244
|
0.160
|
0.127
|
0.108
|
0.032
|
0.246
|
0.902
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004183
|
2.000
|
1.000
|
Hsc_gene_14228.t1
|
Hsc_gene_14227.t1;Hsc_gene_14228.t1
|
— |
O76840.1 Papilin [Caenorhabditis elegans]
|
KAH7730490.1 thrombospondin [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0030198
|
GO:0008150_0.835|GO:0005575_0.766|GO:0110165_0.766|GO:0009987_0.724|GO:0071944_0.530|GO:0032501_0.517|GO:0032502_0.511
|
IPR000884+106-155_107-154_381-439_385-439_441-504_442-499_502-563_505-563_566-625_624-685_627-688_687-744_690-744+|IPR002223+1155-1210_1157-1209_1216-1271_1217-1270_1218-1270_1344-1397_1345-1396_1346-1396_1440-1493_1441-1492_1442-1492_1538-1552_1539-1592_1540-1591_1541-1591_1566-1576_1576-1591_1596-1649_1598-1648_1598-1649+|IPR010294+258-373+|IPR013273+115-133_217-236_237-256+|IPR020901+1187-1205_1248-1266_1374-1392_1470-1488_1569-1587_1626-1644+|IPR036383+93-160_107-154_382-438_383-438_434-503_440-504_498-562_505-562_620-683_625-687_689-743_691-743+|IPR036880+1154-1212_1156-1211_1215-1278_1217-1272_1336-1403_1341-1398_1431-1503_1437-1493_1537-1592_1539-1593_1593-1649_1594-1652+|IPR045371+160-256+|IPR050439+567-1196+
|
SM00131+1155-1210_1216-1271_1344-1397_1440-1493_1539-1592_1596-1649+|SM00209+106-155_381-439_441-504_505-563_566-625_627-688_690-744+
|
PF00014+1157-1209_1217-1270_1345-1396_1441-1492_1540-1591_1598-1649+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain|PF00090+107-154+Thrombospondin_type_1_domain|PF05986+258-373+ADAM-TS_Spacer_1|PF19030+382-438_442-503_506-562_628-687_692-743+Thrombospondin_type_1_domain|PF19236+160-256+ADAMTS_cysteine-rich_domain
|
G3DSA:2.20.100.10:FF:000005+380-439+ADAM_metallopeptidase_with_thrombospondin_type_1_motif_9|G3DSA:2.60.120.830:FF:000001+243-380+A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_1|G3DSA:4.10.410.10:FF:000020+1150-1215_1336-1402_1533-1596+Collagen,_type_VI,_alpha_3
|
PTHR13723+567-1196+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-79;1285-1334
|
2.000
|
80-1284;1335-1658
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
180002.500
|
5.131
|
-29.500
|
24.246
|
10.314
|
44.511
|
55.489
|
11.701
|
12.545
|
59.710
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
greenyellow
|
3470.004
|
2179.973
|
2075.821
|
4558.679
|
7629.163
|
5350.115
|
1354.777
|
2087.420
|
375.842
|
5435.907
|
3267.308
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.297
|
0.927
|
1.241
|
0.711
|
-0.496
|
-1.974
|
-1.465
|
-0.482
|
-3.957
|
3.777
|
— | — | — |