SCN Proteipedia

Hg_chrom5_TN10mRNA_9507

Organism: Heterodera glycines Gene Locus: chr5:3533600-3540125 Feature type: polypeptide

Protein Sequence

Length: 1,034

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.978	0.855	0.879	0.4	1.112	0.843	0.794	0.919	1.547	1.215	0.835	1.536	1.639	0.874	0.947	0.857	1.015	1.231	1.116	0.74	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8938	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Not_Clustered	0.647

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.113	0.119	0.013	0.198	0.500	0.509	0.450	0.004	0.626	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009276	1.000	1.000	Hsc_gene_19958.t1	Hsc_gene_19957.t1;Hsc_gene_19958.t1	—	P13607.3 Sodium/potassium-transporting ATPase subunit alpha [Drosophila melanogaster]	KHN82508.1 Sodium/potassium-transporting ATPase subunit alpha [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005524\|GO:0006813\|GO:0008556\|GO:0016020\|GO:0016887	GO:0008150_0.883\|GO:0005575_0.862\|GO:0110165_0.862\|GO:0016020_0.795\|GO:0071944_0.785\|GO:0005886_0.773\|GO:0009987_0.759\|GO:0006810_0.745\|GO:0051179_0.745\|GO:0051234_0.745\|GO:0003674_0.709\|GO:0055085_0.662\|GO:0006811_0.623\|GO:0034220_0.589\|GO:0065007_0.546\|GO:0005215_0.538\|GO:0022857_0.538\|GO:0006812_0.528\|GO:0030001_0.520\|GO:0098660_0.519	IPR001757+140-410_701-814+\|IPR004014+46-120_48-115+\|IPR005775+34-1034+\|IPR006068+811-1018+\|IPR008250+170-277+\|IPR018303+380-386+\|IPR023214+375-767+\|IPR023298+47-1025+\|IPR023299+384-611_388-606+\|IPR036412+594-776+\|IPR044492+359-780+\|IPR050510+28-1031+	SM00831+46-120+	PF00122+168-357+E1-E2_ATPase\|PF00689+811-1018+Cation_transporting_ATPase,_C-terminus\|PF00690+48-115+Cation_transporter/ATPase,_N-terminus\|PF00702+596-741+haloacid_dehalogenase-like_hydrolase\|PF13246+439-533+Cation_transport_ATPase_(P-type)	G3DSA:1.20.1110.10:FF:000038+768-1028+Sodium/potassium-transporting_ATPase_subunit_alpha\|G3DSA:1.20.1110.10:FF:000095+259-415+Sodium/potassium-transporting_ATPase_subunit_alpha-1\|G3DSA:2.70.150.10:FF:000003+147-280+Sodium/potassium-transporting_ATPase_subunit_alpha\|G3DSA:3.40.1110.10:FF:000001+388-606+Sodium/potassium-transporting_ATPase_subunit_alpha\|G3DSA:3.40.50.1000:FF:000083+601-767+Sodium/potassium-transporting_ATPase_subunit_alpha	PTHR43294+28-1031+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-43	1.000	44-1034	1q3i_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.554	115128.760	6.144	-4.500	23.501	11.702	42.650	57.350	11.992	11.509	49.613

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	turquoise	1772.857	1608.980	3447.914	1256.810	1387.282	4555.037	1255.247	5678.377	81.293	499.162	320.075

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.871	-0.494	-1.348	0.111	1.730	-1.850	—	-2.038	-2.753	4.140	—	—	—

No JSON data available for plots.

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