SCN Proteipedia

Hg_chrom5_TN10mRNA_9711

Organism: Heterodera glycines Gene Locus: chr5:4254527-4262308 Feature type: polypeptide

Protein Sequence

Length: 1,222

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.98	0.971	0.863	0.423	0.955	1.007	0.925	0.655	1.637	1.305	0.806	1.348	1.114	0.771	1.152	0.959	1.167	1.215	0.881	0.409	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9137	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-Not_Clustered	0.761

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRLRI	—	—	—	—	—	—	0.000	—	—	0.084	0.118	0.015	0.143	0.407	0.583	0.456	0.016	0.732	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009411	1.000	1.000	Hsc_gene_20150.t1	Hsc_gene_20150.t1	—	Q01814.2 Plasma membrane calcium-transporting ATPase 2 [Homo sapiens]	KAI6176344.1 Calcium-transporting ATPase [Aphelenchoides bicaudatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005388\|GO:0005524\|GO:0016020\|GO:0016887\|GO:0070588	GO:0008150_0.942\|GO:0005575_0.931\|GO:0110165_0.926\|GO:0016020_0.896\|GO:0071944_0.846\|GO:0005886_0.832\|GO:0009987_0.808\|GO:0003674_0.729\|GO:0051179_0.680\|GO:0006810_0.678\|GO:0051234_0.678\|GO:0043226_0.635\|GO:0005622_0.593\|GO:0006811_0.567\|GO:0032501_0.550\|GO:0006812_0.535\|GO:0030001_0.529\|GO:0043227_0.524\|GO:0005737_0.523\|GO:0043229_0.522\|GO:0055085_0.509	IPR001757+157-283_422-505_783-897+\|IPR004014+37-111_40-106+\|IPR006068+902-1083+\|IPR006408+369-976+\|IPR008250+191-288+\|IPR018303+485-491+\|IPR022141+1139-1166+\|IPR023214+708-833+\|IPR023298+39-1089+\|IPR023299+489-712_534-707+\|IPR036412+482-921+\|IPR044492+465-869+	SM00831+37-111+	PF00122+189-300_361-462+E1-E2_ATPase\|PF00689+902-1083+Cation_transporting_ATPase,_C-terminus\|PF00690+40-106+Cation_transporter/ATPase,_N-terminus\|PF00702+659-831+haloacid_dehalogenase-like_hydrolase\|PF12424+1139-1166+Plasma_membrane_calcium_transporter_ATPase_C_terminal\|PF13246+544-626+Cation_transport_ATPase_(P-type)	G3DSA:1.20.1110.10:FF:000001+834-1088+Calcium-transporting_ATPase\|G3DSA:1.20.1110.10:FF:000002+89-179+Calcium-transporting_ATPase\|G3DSA:1.20.1110.10:FF:000033+353-498+Calcium-transporting_ATPase\|G3DSA:2.70.150.10:FF:000001+163-290+Calcium-transporting_ATPase\|G3DSA:3.40.1110.10:FF:000147+542-706+Calcium-transporting_ATPase\|G3DSA:3.40.50.1000:FF:000007+707-833+Calcium-transporting_ATPase	PTHR24093+17-1087+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	288-333	2.000	1-287;334-1222	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.739	133504.890	8.210	14.000	22.750	7.856	44.681	55.319	12.275	10.475	52.209

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	brown	4947.518	4244.074	6506.158	4607.100	11687.198	7212.757	5572.306	11307.326	1830.871	1095.892	1410.883

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.389	—	-0.391	1.311	-0.682	-0.363	0.549	-0.882	—	1.498	3.707	—	—

No JSON data available for plots.

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