Hg_chrom6_TN10mRNA_12334
Organism: Heterodera glycines Gene Locus: chr6:6282678-6302771 Feature type: polypeptideProtein Sequence
Length: 3,909
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.071 | 0.865 | 2.161 | 1.091 | 1.384 | 0.993 | 1.087 | 0.807 | 0.989 | 0.512 | 0.767 | 1.322 | 1.392 | 1.175 | 1.148 | 0.797 | 0.907 | 1.004 | 0.557 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11621
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.758
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-33
|
— |
0.856
|
— |
1.000
|
0.169
|
0.064
|
0.014
|
0.265
|
0.127
|
0.301
|
0.279
|
0.025
|
0.763
|
0.214
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002335
|
2.000
|
2.000
|
Hsc_gene_1772.t1;Hsc_gene_24108.t1
|
Hsc_gene_1772.t1;Hsc_gene_24106.t1;Hsc_gene_24108.t1
|
— |
Q7Z408.2 CUB and sushi domain-containing protein 2 [Homo sapiens]
|
XP_042930343.1 GCC2 and GCC3 family protein [Brugia malayi];VIO87731.1 GCC2 and GCC3 family protein [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0008150_0.843|GO:0005575_0.753|GO:0110165_0.728|GO:0003674_0.703|GO:0009987_0.679|GO:0032501_0.602|GO:0032502_0.576|GO:0048856_0.576|GO:0065007_0.520|GO:0071944_0.519|GO:0050896_0.515|GO:0050789_0.501
|
IPR000152+938-949_2413-2424_2489-2500_2527-2538_2568-2579_2606-2617_2773-2784+|IPR000421+1468-1614_1469-1614_1473-1613_1497-1604+|IPR000436+656-720_658-718_721-781_723-779_723-780_782-842_784-840_784-841_861-918_882-918_1218-1278_1220-1276_1220-1277_1352-1419_1354-1417_1354-1418_1422-1469_3167-3237_3169-3235+|IPR000742+920-960_923-960_947-959_1155-1216_2241-2277_2244-2277_2265-2276_2279-2315_2282-2315_2283-2313_2303-2314_2317-2356_2320-2356_2344-2355_2358-2396_2361-2396_2362-2393_2384-2395_2398-2434_2401-2434_2402-2432_2422-2433_2436-2472_2439-2472_2440-2469_2460-2471_2474-2510_2477-2510_2478-2506_2498-2509_2512-2548_2515-2548_2516-2544_2536-2547_2550-2589_2553-2589_2577-2588_2591-2627_2594-2627_2595-2625_2615-2626_2629-2666_2632-2666_2633-2664_2654-2665_2668-2704_2671-2704_2692-2703_2706-2756_2709-2756_2744-2755_2758-2794_2761-2794_2782-2793_3565-3602_3626-3668_3668-3703_3670-3703_3691-3702+|IPR000859+296-405_296-409_303-408_413-520_413-523_524-657+|IPR001304+108-250_115-250_126-251+|IPR001881+920-960_1152-1194_2263-2315_2319-2356_2360-2396_2398-2434_2436-2472_2474-2510_2513-2548_2550-2589_2591-2627_2633-2666_2706-2756_2758-2794_3623-3668+|IPR002172+253-288_253-289_253-290_254-288+|IPR003410+1640-1726_1641-1722_1725-1807_1727-1810_3080-3166+|IPR008979+1469-1615+|IPR009030+2108-2240_2385-2517_2556-2672_2740-3442_3414-3607+|IPR011641+2090-2129_2136-2186_2193-2240_3412-3459_3475-3513_3526-3566_3574-3621+|IPR013032+2250-2271_2567-2583+|IPR013320+2816-3002+|IPR016186+59-255+|IPR016187+103-254+|IPR018097+920-947_2398-2422_2474-2498_2758-2782+|IPR023415+266-288+|IPR035914+292-410_295-409_411-522_412-521_523-656_523-657+|IPR035976+657-732_721-785_783-854_1215-1278_1353-1424+|IPR036055+248-289_256-285+|IPR049883+920-955_1152-1184+
|
SM00032+658-718_723-779_784-840_861-918_1220-1276_1354-1417_1422-1469_3169-3235+|SM00034+108-250+|SM00042+296-409_413-523_524-657+|SM00179+920-960_1152-1194_2263-2315_2319-2356_2360-2396_2398-2434_2436-2472_2474-2510_2513-2548_2550-2589_2591-2627_2633-2666_2706-2756_2758-2794_3623-3668+|SM00181+923-960_1155-1216_2244-2277_2282-2315_2320-2356_2361-2396_2401-2434_2439-2472_2477-2510_2515-2548_2553-2589_2594-2627_2632-2666_2671-2704_2709-2756_2761-2794_3565-3602_3626-3668_3670-3703+|SM00192+253-290+|SM00231+1468-1614+|SM01411+2084-2129_2136-2186_2193-2240_3411-3459_3466-3513_3520-3566_3574-3621+
|
PF00008+2283-2313_2362-2393_2402-2432_2440-2469_2478-2506_2516-2544_2595-2625_2633-2664+EGF-like_domain|PF00057+253-288+Low-density_lipoprotein_receptor_domain_class_A|PF00059+126-251+Lectin_C-type_domain|PF00084+723-779_784-840_882-918_1220-1276_1354-1417+Sushi_repeat_(SCR_repeat)|PF00431+296-405_413-520+CUB_domain|PF00754+1497-1604+F5/8_type_C_domain|PF02494+1641-1722_1725-1807+HYR_domain|PF07645+920-955_1152-1184+Calcium-binding_EGF_domain|PF07699+2090-2129_2136-2186_2193-2240_3412-3459_3475-3513_3526-3566_3574-3621+Tyrosine-protein_kinase_ephrin_type_A/B_receptor-like|PF12661+2250-2271_2567-2583+Human_growth_factor-like_EGF
|
G3DSA:2.10.25.10:FF:000038+915-959+Fibrillin_2|G3DSA:2.10.25.10:FF:000066+2280-2317_2514-2550+FAT_atypical_cadherin_4|G3DSA:2.10.25.10:FF:000117+2399-2437+Delta-like_protein|G3DSA:2.10.25.10:FF:000146+2552-2591+Putative_neurogenic_locus_notch|G3DSA:2.10.25.10:FF:000173+2360-2398+Neurogenic_locus_notch_protein_2|G3DSA:2.10.25.10:FF:000247+2592-2629+Delta/notch_like_EGF_repeat_containing|G3DSA:2.10.25.10:FF:000472+2438-2513_2721-2798+Uncharacterized_protein,_isoform_A|G3DSA:2.10.50.10:FF:000018+2086-2142+Sushi,_von_Willebrand_factor_type_A,_EGF_and_pentraxin_domain-containing_1|G3DSA:2.10.70.10:FF:000014+1218-1277+Membrane_cofactor_protein|G3DSA:2.60.120.290:FF:000005+411-521+Procollagen_C-endopeptidase_enhancer_1
|
PTHR12916+2223-2687+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
3298-3370;3799-3909
|
2.000
|
1-3297;3371-3798
|
9b3n_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
428853.640
|
5.636
|
-42.500
|
22.614
|
10.130
|
45.510
|
54.490
|
11.307
|
11.307
|
56.536
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
801.887
|
795.361
|
483.074
|
327.786
|
759.477
|
1177.226
|
927.691
|
303.955
|
88.533
|
1651.392
|
981.596
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.951
|
-1.416
|
-0.449
|
1.180
|
0.649
|
-0.335
|
-2.068
|
1.755
|
-4.365
|
— | — | — | — |