SCN Proteipedia

Hg_chrom6_TN10mRNA_12484

Organism: Heterodera glycines Gene Locus: chr6:6881961-6883077 Feature type: polypeptide

Protein Sequence

Length: 300

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.008	1.395	1.152	0.115	1.167	1.795	0.437	1.0	0.963	1.351	1.515	1.569	0.741	0.897	1.156	0.619	0.82	0.909	0.769	0.784	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11762	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	0.987

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKKKK,RKPNANLGPKRKQPR	—	—	—	—	—	—	0.000	—	—	0.926	0.028	0.013	0.307	0.036	0.018	0.053	0.001	0.017	0.037

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010757	1.000	1.000	Hsc_gene_6187.t1	Hsc_gene_6187.t1	—	—	KAF7639131.1 Transcription initiation factor IIE subunit beta [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005673\|GO:0006367	GO:0008150_0.932\|GO:0005575_0.916\|GO:0110165_0.913\|GO:0009987_0.883\|GO:0005622_0.879\|GO:0003674_0.855\|GO:0016020_0.825\|GO:0043226_0.817\|GO:0005488_0.809\|GO:0005737_0.806\|GO:0043229_0.805\|GO:0008152_0.783\|GO:0044238_0.779\|GO:0044237_0.772\|GO:0043170_0.769\|GO:0009058_0.763\|GO:0043227_0.759\|GO:0044249_0.750\|GO:0009059_0.744\|GO:0006139_0.741\|GO:0043231_0.736\|GO:0010467_0.733\|GO:0090304_0.721\|GO:0034654_0.720\|GO:0141187_0.713\|GO:0016070_0.709\|GO:0097159_0.707\|GO:0032774_0.706\|GO:0032991_0.705\|GO:0006351_0.690\|GO:0003676_0.686\|GO:0006366_0.682\|GO:0003723_0.680\|GO:0005829_0.668\|GO:0005634_0.662\|GO:0016251_0.650\|GO:0140223_0.650\|GO:0031974_0.608\|GO:0043233_0.608\|GO:0070013_0.608\|GO:0031981_0.603\|GO:1902494_0.583\|GO:0005654_0.577\|GO:0140513_0.576\|GO:0140535_0.566\|GO:0061695_0.557\|GO:1990234_0.557\|GO:0000428_0.549\|GO:0030880_0.549\|GO:0055029_0.549\|GO:0005667_0.547\|GO:0090575_0.546\|GO:0005669_0.540\|GO:0016591_0.540	IPR003166+70-155_76-155_83-154+\|IPR016656+1-297_1-299+\|IPR036388+75-155+\|IPR036390+76-155+\|IPR040501+155-214+	—	PF02186+83-154+TFIIE_beta_subunit_core_domain\|PF18121+155-214+TFA2_Winged_helix_domain_2	G3DSA:1.10.10.10:FF:000177+74-155+Transcription_initiation_factor_IIE_subunit_beta	PTHR12716+1-297+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-70;248-300	1.000	71-247	1d8k_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.725	34312.220	9.761	10.000	31.000	8.333	53.333	46.667	17.667	13.333	45.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	yellow	724.696	494.834	574.354	592.581	691.466	812.394	872.597	836.667	1054.316	551.724	767.121

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	0.154	0.190	0.248	—	—	—	—	—	—	—	—

No JSON data available for plots.

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