Hg_chrom7_TN10mRNA_13419
Organism: Heterodera glycines Gene Locus: chr7:1547673-1559299 Feature type: polypeptideProtein Sequence
Length: 1,050
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.118 | 0.886 | 1.108 | 0.69 | 0.841 | 1.27 | 0.839 | 1.476 | 0.91 | 1.66 | 0.635 | 1.176 | 1.111 | 0.641 | 1.458 | 0.952 | 0.921 | 0.996 | 0.44 | 0.588 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12655
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
HRKKRIKELKKRK,KKETEFSSHRKKRIKELKK
|
9-29
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.741
|
0.178
|
0.024
|
0.413
|
0.140
|
0.158
|
0.085
|
0.019
|
0.075
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004508
|
2.000
|
1.000
|
Hsc_gene_24016.t1
|
Hsc_gene_17009.t1;Hsc_gene_24016.t1;Hsc_gene_24017.t1;Hsc_gene_24018.t1;Hsc_gene_24019.t1
|
— |
Q9H0A0.2 RNA cytidine acetyltransferase [Homo sapiens]
|
KAI3413697.1 N-acetyltransferase 10 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0008080|GO:0016072|GO:0016747|GO:1904812
|
GO:0008150_0.958|GO:0009987_0.901|GO:0005575_0.887|GO:0110165_0.883|GO:0003674_0.882|GO:0016020_0.807|GO:0008152_0.798|GO:0005622_0.795|GO:0044238_0.776|GO:0003824_0.753|GO:0043170_0.748|GO:0043226_0.732|GO:0071840_0.726|GO:0043229_0.718|GO:0006139_0.714|GO:0090304_0.699|GO:0016070_0.694|GO:0043412_0.693|GO:0016740_0.692|GO:0043227_0.688|GO:0043231_0.671|GO:0009451_0.670|GO:0044085_0.670|GO:0016746_0.664|GO:0016747_0.654|GO:0008080_0.650|GO:0016407_0.650|GO:0016410_0.650|GO:0022613_0.646|GO:0042254_0.646|GO:0042274_0.646|GO:0005488_0.602|GO:0043228_0.582|GO:0043232_0.582|GO:0005634_0.577|GO:0044237_0.561|GO:0031974_0.558|GO:0043233_0.557|GO:0070013_0.557|GO:0009058_0.554|GO:0031981_0.552|GO:0044249_0.532|GO:0005730_0.526|GO:0009059_0.519|GO:0010467_0.509|GO:0097159_0.505
|
IPR000182+539-787+|IPR007807+285-497+|IPR013562+9-201+|IPR016181+633-669+|IPR027417+280-487+|IPR027992+840-1019+|IPR032672+836-1023+|IPR033688+2-1046+
|
— |
PF05127+285-497+Helicase|PF08351+9-201+tRNA(Met)_cytidine_acetyltransferase_TmcA,_N-terminal|PF13718+539-787+GNAT_acetyltransferase_2|PF13725+840-1019+Possible_tRNA_binding_domain
|
G3DSA:3.40.50.300:FF:002218+281-487+tRNA(Met)_cytidine_acetyltransferase_TmcA
|
PTHR10925+836-1023+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1050
|
5wlc_LY
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
115869.330
|
7.724
|
17.500
|
25.429
|
9.524
|
46.476
|
53.524
|
14.286
|
11.143
|
50.762
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkgrey
|
2202.784
|
1906.451
|
1406.973
|
2501.411
|
2527.766
|
1746.591
|
1505.499
|
679.932
|
1037.384
|
4256.157
|
2876.683
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.668
|
0.255
|
0.939
|
— |
-0.518
|
-0.204
|
-1.466
|
1.290
|
— | — | — | — | — |
No JSON data available for plots.