SCN Proteipedia

Hg_chrom7_TN10mRNA_14527

Organism: Heterodera glycines Gene Locus: chr7:7127488-7128955 Feature type: polypeptide

Protein Sequence

Length: 230

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.556	0.91	0.632	1.049	4.783	0.334	1.294	1.522	0.193	0.646	1.186	0.767	1.329	0.334	1.42	0.559	0.855	0.329	0.334	0.256	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13710	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KSKKAT	—	—	—	—	—	—	0.000	—	—	0.961	0.032	0.028	0.225	0.015	0.007	0.011	0.002	0.055	0.073

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000438	7.000	1.000	Hsc_gene_22379.t1	Hsc_gene_22378.t1;Hsc_gene_23566.t1	—	P22227.1 Zinc finger protein 42 [Mus musculus]	XP_050949952.1 zinc finger protein 721-like isoform X2 [Labeo rohita]	No	-0.130

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.932\|GO:0005575_0.859\|GO:0110165_0.859\|GO:0005622_0.852\|GO:0003674_0.849\|GO:0005488_0.849\|GO:0009987_0.836\|GO:0065007_0.787\|GO:0050789_0.783\|GO:0043226_0.780\|GO:0097159_0.779\|GO:0003676_0.765\|GO:0043229_0.761\|GO:0050794_0.749\|GO:0016020_0.741\|GO:0008152_0.732\|GO:0019222_0.732\|GO:0009058_0.724\|GO:0009059_0.724\|GO:0010467_0.724\|GO:0043170_0.724\|GO:0044237_0.724\|GO:0044249_0.724\|GO:0031323_0.717\|GO:0044238_0.712\|GO:0060255_0.712\|GO:0080090_0.712\|GO:0043227_0.710\|GO:0009889_0.701\|GO:0031326_0.701\|GO:0006139_0.699\|GO:0005634_0.695\|GO:0043231_0.695\|GO:0016070_0.690\|GO:0032774_0.690\|GO:0034654_0.690\|GO:0090304_0.690\|GO:0141187_0.690\|GO:0010556_0.687\|GO:0003677_0.684\|GO:0010468_0.683\|GO:0043565_0.677\|GO:0006351_0.658\|GO:0006355_0.657\|GO:0019219_0.657\|GO:0051252_0.657\|GO:2001141_0.657\|GO:0003690_0.613\|GO:1990837_0.602\|GO:0048518_0.579\|GO:0048522_0.576\|GO:0043228_0.575\|GO:0043232_0.575\|GO:0032501_0.557\|GO:0009893_0.550\|GO:0010604_0.540\|GO:0009891_0.536\|GO:0031325_0.536\|GO:0031328_0.536\|GO:0006357_0.534\|GO:0006366_0.534\|GO:0010557_0.534\|GO:0001067_0.511\|GO:0000976_0.507	IPR013087+137-159_137-164_139-159_165-187_165-192_167-187_193-215_193-220_195-215+\|IPR036236+135-187_174-222+	SM00355+137-159_165-187_193-215+	PF00096+137-159_167-187_193-215+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000065+162-188+B-cell_CLL/lymphoma_6,_member_B\|G3DSA:3.30.160.60:FF:001450+136-161+zinc_finger_protein_774\|G3DSA:3.30.160.60:FF:001498+191-226+Zinc_finger_protein_404	PTHR23235+105-225+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-130	1.000	131-230	2i13_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.935	26445.180	4.178	-36.500	50.000	9.130	64.348	35.652	17.826	32.174	39.130

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	blue	19.377	0.227	1.761	0.990	1.454	0.251	38.410	0.279	1.028	67.739	39.149

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	7.270	—	7.265	-5.831	—	-5.210	—	—

No JSON data available for plots.

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